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Jython script for Trackmate-Stardist #1
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Awesome! |
I don't have permission to create a branch, unfortunately. Could you add me? |
Ah no worries the usual way is to fork the repo to your org, make a commit there and then a pull request |
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Hi Jean-Vyes,
I wanted to create a Jython script to use the
StarDistDetectorFactory
to detect droplets and track them. I was trying to use the sample Jython script provided in this repo to analyze some images and quickly ran into errors.I managed to make some changes and get it running. It still throws some errors which I have commented out in the code. But for the rest, it does the job of using the standard StarDist model to detect objects and track them.
I am attaching it here with a small sample image. I could also do a pull request if this looks okay.
stardist_trackmate.zip
Thanks and best,
Gayathri
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