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DataBase Issue - Aggregate DB - UID: h3jfi #27

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Farbodch opened this issue Jun 23, 2024 · 0 comments
Open

DataBase Issue - Aggregate DB - UID: h3jfi #27

Farbodch opened this issue Jun 23, 2024 · 0 comments

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@Farbodch
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Farbodch commented Jun 23, 2024

The following DB has x9 folders in its ./spatial subfolder, each with their own distinct image_ & scalefactors_ files, and cannot be parsed into the visium reader.
Note: This is an aggregate DB, and its subsections already exist in our scripts/database.

  • h3jfi__10X__Visium__Mouse__lung_brain__20230221__v2.0.1__AggregateofTissueCores db on 10x website

They are the following:

  • jezks__10X__Visium__Mouse__lung_brain__20230221__v2.0.1__InputsLibrary
  • vrwlc__10X__Visium__Mouse__lung_brain__20230221__v2.0.1__AllTissueCores
  • uk0rv__10X__Visium__Mouse__lung_brain__20230221__v2.0.1__BrainReplicate1
  • 0ufac__10X__Visium__Mouse__lung_brain__20230221__v2.0.1__BrainReplicate2
  • bw2x9__10X__Visium__Mouse__lung_brain__20230221__v2.0.1__BrainReplicate3
  • f0fww__10X__Visium__Mouse__lung_brain__20230221__v2.0.1__BrainReplicate4
  • th4zp__10X__Visium__Mouse__lung_brain__20230221__v2.0.1__LungReplicate1
  • 5nwfc__10X__Visium__Mouse__lung_brain__20230221__v2.0.1__LungReplicate2
  • vt6x9__10X__Visium__Mouse__lung_brain__20230221__v2.0.1__LungReplicate3
  • 4b368__10X__Visium__Mouse__lung_brain__20230221__v2.0.1__LungReplicate4
  • 9btjk__10X__Visium__Mouse__lung_brain__20230221__v2.0.1__LungReplicate5

Refer to #11

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