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Visium DBs missing all visium-reader inputs #12

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Farbodch opened this issue Jun 4, 2024 · 0 comments
Open

Visium DBs missing all visium-reader inputs #12

Farbodch opened this issue Jun 4, 2024 · 0 comments

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@Farbodch
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Farbodch commented Jun 4, 2024 •
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The following dbs are missing all the inputs the visium-reader requires (not provided by 10x):

  • 0nuqa__10X__Visium__Human__ovary__20201027__v1.2.0
  • 3554v__10X__Visium__Human__brain_cerebellum__20201027__v1.2.0

Subpipeline for the above dbs: spaceranger targeted-compare
as opposed to subpipeline spaceranger count for the rest of the dbs of the same organ (Ovary/Cerebellum) in the respective Pipeline version (v1.2.0).
@Farbodch Farbodch changed the title visium DBs missing all visium-reader inputs Visium DBs missing all visium-reader inputs Jun 4, 2024
This was referenced Jun 23, 2024
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@Farbodch