diff --git a/README.md b/README.md index 2a4e129..12f1726 100644 --- a/README.md +++ b/README.md @@ -2,20 +2,20 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-08-22 12:10:29 UTC +2024-08-23 12:10:26 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 723 | 18 | 67 | 167 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535081) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535098) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535076) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535080) | 6461a5 | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 405 | 13 | 61 | 102 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/9892975902) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/9892975897) | 3fbce6 | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 405 | 13 | 61 | 102 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 336 | 9 | 17 | 45 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10239706729) | 43c32b | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 336 | 9 | 17 | 45 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10493164402) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10493164403) | 6b7033 | +| [theislab/scvelo](https://github.com/theislab/scvelo) | 406 | 13 | 61 | 102 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/9892975902) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/9892975897) | 3fbce6 | +| [theislab/scvelo](https://github.com/theislab/scvelo) | 406 | 13 | 61 | 102 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 337 | 9 | 17 | 45 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10239706729) | 43c32b | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 337 | 9 | 17 | 45 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10493164402) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10493164403) | 6b7033 | | [theislab/scib](https://github.com/theislab/scib) | 286 | 14 | 37 | 62 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/10287985783) | 5547cd | | [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 144 | 5 | 25 | 27 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/9611012269) | 328e7e | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 136 | 5 | 41 | 18 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724893) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724911) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724909) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724900) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724894) | 4e4888 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 136 | 5 | 41 | 18 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 136 | 5 | 41 | 18 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) | e0e081 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 136 | 5 | 40 | 18 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10523726265) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10523726268) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10523726264) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10523726270) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10523726273) | 423a63 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 136 | 5 | 40 | 18 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 136 | 5 | 40 | 18 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) | e0e081 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 134 | 8 | 167 | 12 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9457340256) | 55bcbb | | [theislab/sfaira](https://github.com/theislab/sfaira) | 134 | 8 | 167 | 12 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 134 | 8 | 167 | 12 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | @@ -28,15 +28,15 @@ GitHub Dashboard | [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 13 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | | [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 13 | 6 | [![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/9366149796) [![](https://github.com/theislab/hadge/workflows/hadge%20test%20workflow/badge.svg)](https://github.com/theislab/hadge/actions/runs/9366149805) | 490a55 | | [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/10459161813) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/10459161788) | a78677 | -| [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/10500244276) | e8a37c | -| [theislab/mubind](https://github.com/theislab/mubind) | 22 | 3 | 30 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10432291601) | cc7e67 | +| [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/10518321304) | e8a37c | +| [theislab/mubind](https://github.com/theislab/mubind) | 22 | 3 | 30 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10524720790) | c06443 | | [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10399050996) | 402a0a | | [theislab/multimil](https://github.com/theislab/multimil) | 14 | 5 | 3 | 1 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/10163998577) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/10399053136) | 2bb4f9 | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/10505979093) | ef5184 | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 6 | 1 | 0 | 1 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/9877064958) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/9877064964) | 9f82e8 | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 5 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/10507650061) | d68ee1 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 1 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/10525325951) | 3854eb | | [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | @@ -45,24 +45,24 @@ GitHub Dashboard | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1343 | 30 | 21 | 449 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1344 | 30 | 21 | 449 | | [theislab/scarches](https://github.com/theislab/scarches) | 328 | 13 | 44 | 51 | | [theislab/scgen](https://github.com/theislab/scgen) | 259 | 9 | 24 | 53 | | [theislab/dca](https://github.com/theislab/dca) | 241 | 11 | 31 | 71 | | [theislab/paga](https://github.com/theislab/paga) | 198 | 10 | 23 | 33 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 186 | 6 | 108 | 23 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 173 | 8 | 0 | 18 | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 173 | 8 | 1 | 19 | | [theislab/kBET](https://github.com/theislab/kBET) | 150 | 8 | 9 | 23 | -| [theislab/scCODA](https://github.com/theislab/scCODA) | 146 | 9 | 7 | 22 | +| [theislab/scCODA](https://github.com/theislab/scCODA) | 146 | 9 | 7 | 23 | | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 140 | 5 | 6 | 10 | -| [theislab/chemCPA](https://github.com/theislab/chemCPA) | 97 | 5 | 10 | 23 | +| [theislab/chemCPA](https://github.com/theislab/chemCPA) | 96 | 5 | 10 | 23 | | [theislab/cpa](https://github.com/theislab/cpa) | 80 | 5 | 18 | 18 | | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 64 | 7 | 17 | 28 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 54 | 6 | 3 | 11 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 53 | 6 | 6 | 8 | | [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 52 | 6 | 3 | 14 | | [theislab/spatial_scog_workshop_2022](https://github.com/theislab/spatial_scog_workshop_2022) | 48 | 9 | 0 | 27 | -| [theislab/nicheformer](https://github.com/theislab/nicheformer) | 42 | 3 | 10 | 2 | +| [theislab/nicheformer](https://github.com/theislab/nicheformer) | 43 | 3 | 10 | 2 | | [theislab/pseudodynamics](https://github.com/theislab/pseudodynamics) | 39 | 7 | 0 | 6 | | [theislab/scTab](https://github.com/theislab/scTab) | 38 | 3 | 1 | 7 | | [theislab/tcellmatch](https://github.com/theislab/tcellmatch) | 37 | 9 | 3 | 7 | @@ -79,10 +79,10 @@ GitHub Dashboard | [theislab/cellrank_reproducibility](https://github.com/theislab/cellrank_reproducibility) | 14 | 2 | 0 | 8 | | [theislab/DeepCollisionalCrossSection](https://github.com/theislab/DeepCollisionalCrossSection) | 14 | 5 | 1 | 6 | | [theislab/multicpa](https://github.com/theislab/multicpa) | 13 | 2 | 1 | 2 | +| [theislab/multigrate](https://github.com/theislab/multigrate) | 13 | 3 | 7 | 6 | | [theislab/scanpy-in-R](https://github.com/theislab/scanpy-in-R) | 13 | 3 | 1 | 0 | | [theislab/scPoli_reproduce](https://github.com/theislab/scPoli_reproduce) | 13 | 3 | 2 | 4 | | [theislab/MetaMap](https://github.com/theislab/MetaMap) | 12 | 7 | 0 | 8 | -| [theislab/multigrate](https://github.com/theislab/multigrate) | 12 | 3 | 7 | 5 | | [theislab/GWAS-scRNAseq-Integration](https://github.com/theislab/GWAS-scRNAseq-Integration) | 11 | 5 | 0 | 12 | | [theislab/ncem_tutorials](https://github.com/theislab/ncem_tutorials) | 11 | 4 | 6 | 0 | | [theislab/cross_system_integration](https://github.com/theislab/cross_system_integration) | 10 | 2 | 10 | 1 | @@ -126,6 +126,7 @@ GitHub Dashboard | [theislab/InterpretableAutoencoders](https://github.com/theislab/InterpretableAutoencoders) | 5 | 4 | 0 | 1 | | [theislab/kbranches](https://github.com/theislab/kbranches) | 5 | 7 | 0 | 0 | | [theislab/pancreatic-endocrinogenesis](https://github.com/theislab/pancreatic-endocrinogenesis) | 5 | 3 | 0 | 6 | +| [theislab/prophet](https://github.com/theislab/prophet) | 5 | 3 | 0 | 0 | | [theislab/scanpy-demo-czbiohub](https://github.com/theislab/scanpy-demo-czbiohub) | 5 | 5 | 0 | 5 | | [theislab/singlecell_proteomics](https://github.com/theislab/singlecell_proteomics) | 5 | 5 | 6 | 3 | | [theislab/2022_Tritschler_pancreas_cross_species](https://github.com/theislab/2022_Tritschler_pancreas_cross_species) | 4 | 3 | 0 | 1 | @@ -134,7 +135,6 @@ GitHub Dashboard | [theislab/feature-attribution-sc](https://github.com/theislab/feature-attribution-sc) | 4 | 2 | 8 | 1 | | [theislab/LODE](https://github.com/theislab/LODE) | 4 | 2 | 9 | 0 | | [theislab/perturbation-metrics](https://github.com/theislab/perturbation-metrics) | 4 | 2 | 1 | 0 | -| [theislab/prophet](https://github.com/theislab/prophet) | 4 | 3 | 0 | 0 | | [theislab/ssl_in_scg](https://github.com/theislab/ssl_in_scg) | 4 | 1 | 0 | 1 | | [theislab/cellrank_reproducibility_preprint](https://github.com/theislab/cellrank_reproducibility_preprint) | 3 | 2 | 0 | 0 | | [theislab/CFGen](https://github.com/theislab/CFGen) | 3 | 1 | 1 | 2 | diff --git a/index.html b/index.html index 60db2d5..afc9a76 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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+ + + + + + + - + - + - - - - - - - @@ -991,68 +991,68 @@

Repos without Github Actions

+ + + + + + + - + - + - + - + - + - + - + - - - - - - - diff --git a/repos.csv b/repos.csv index e8e26ca..442cbce 100644 --- a/repos.csv +++ b/repos.csv @@ -46,15 +46,15 @@ theislab,batchglm,theislab/batchglm,27,3,47,9,FALSE,https://github.com/theislab/ theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,NA,NA,NA theislab,campa,theislab/campa,14,4,5,4,FALSE,https://github.com/theislab/campa,14,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,336,9,17,45,FALSE,https://github.com/theislab/cellrank,336,43c32bb904243bbfc9dba2b2faea3607d50c95a5,Remove numba cache (#1212),[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10239706729) -theislab,cellrank,theislab/cellrank,336,9,17,45,FALSE,https://github.com/theislab/cellrank,336,6b703342a0afb246b0b6784b780a1cfa98869725,More verbose CI,[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10493164402) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10493164403) +theislab,cellrank,theislab/cellrank,337,9,17,45,FALSE,https://github.com/theislab/cellrank,337,43c32bb904243bbfc9dba2b2faea3607d50c95a5,Remove numba cache (#1212),[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10239706729) +theislab,cellrank,theislab/cellrank,337,9,17,45,FALSE,https://github.com/theislab/cellrank,337,6b703342a0afb246b0b6784b780a1cfa98869725,More verbose CI,[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10493164402) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10493164403) theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,6,1,0,1,FALSE,https://github.com/theislab/cellrank2_reproducibility,6,9f82e87ae090f08302b760ba13ec660b3d11ef5d,"Update `labeling_kernel/inference.ipynb` (#62) Specify initial parameter estimate as `None`.",[![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/9877064958) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/9877064964) theislab,cellrank_notebooks,theislab/cellrank_notebooks,6,4,1,5,FALSE,https://github.com/theislab/cellrank_notebooks,6,6777840bcc146924d208c0b9b02677da63620805,[ci skip] Fix pepy badge,[![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) theislab,cellrank_reproducibility,theislab/cellrank_reproducibility,14,2,0,8,FALSE,https://github.com/theislab/cellrank_reproducibility,14,NA,NA,NA theislab,cellrank_reproducibility_preprint,theislab/cellrank_reproducibility_preprint,3,2,0,0,FALSE,https://github.com/theislab/cellrank_reproducibility_preprint,3,NA,NA,NA -theislab,chemCPA,theislab/chemCPA,97,5,10,23,FALSE,https://github.com/theislab/chemCPA,97,NA,NA,NA +theislab,chemCPA,theislab/chemCPA,96,5,10,23,FALSE,https://github.com/theislab/chemCPA,96,NA,NA,NA theislab,collideseq_reproducibility,theislab/collideseq_reproducibility,0,2,0,0,FALSE,https://github.com/theislab/collideseq_reproducibility,0,NA,NA,NA theislab,consensus-clustering-evaluation,theislab/consensus-clustering-evaluation,0,4,0,0,FALSE,https://github.com/theislab/consensus-clustering-evaluation,0,NA,NA,NA theislab,countae,theislab/countae,1,4,0,0,FALSE,https://github.com/theislab/countae,1,NA,NA,NA @@ -71,13 +71,23 @@ theislab,diffxpy,theislab/diffxpy,186,6,108,23,FALSE,https://github.com/theislab theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA theislab,disent,theislab/disent,6,3,0,0,FALSE,https://github.com/theislab/disent,6,NA,NA,NA theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA -theislab,ehrapy,theislab/ehrapy,136,5,41,18,FALSE,https://github.com/theislab/ehrapy,136,4e488862b970c6157b961f0b8529869283bb6fe0,"Get rid of lots of sphinx warnings and hide-output (#788) +theislab,ehrapy,theislab/ehrapy,136,5,40,18,FALSE,https://github.com/theislab/ehrapy,136,423a633c35efdd5be9992cade33443432274006f,"fix ep.tl.umap when neighbors_key is not None (#790) -Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724893) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724911) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724909) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724900) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10485724894) -theislab,ehrapy,theislab/ehrapy,136,5,41,18,FALSE,https://github.com/theislab/ehrapy,136,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows +* remove buggy extra uns checks of ep, let sc do it + +* add check with ep instruction + +* Update ehrapy/tools/_scanpy_tl_api.py + +Co-authored-by: Lukas Heumos + +--------- + +Co-authored-by: Lukas Heumos ",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10523726265) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10523726268) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10523726264) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10523726270) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10523726273) +theislab,ehrapy,theislab/ehrapy,136,5,40,18,FALSE,https://github.com/theislab/ehrapy,136,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) -theislab,ehrapy,theislab/ehrapy,136,5,41,18,FALSE,https://github.com/theislab/ehrapy,136,e0e081a3308add30d6ba55fcd8b28566e35e9386,Update fig1,[![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) +theislab,ehrapy,theislab/ehrapy,136,5,40,18,FALSE,https://github.com/theislab/ehrapy,136,e0e081a3308add30d6ba55fcd8b28566e35e9386,Update fig1,[![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA theislab,ehrapy-datasets,theislab/ehrapy-datasets,5,2,0,2,FALSE,https://github.com/theislab/ehrapy-datasets,5,e441a5d0912396064360799f10de973b377ba6a5,"Merge pull request #23 from theislab/diabetes-update @@ -97,7 +107,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,9,4,0,1,FALSE,http theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,402a0a8cdb442fee8666416e5f163c4098fa0c07,"Merge pull request #55 from theislab/fix/toarray Fix Sparse "".A"" Not Found",[![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10399050996) -theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,d68ee17e679e2126c2cb613176182f686ba83edb,[status] 2024-08-21 12:13:47 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/10507650061) +theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,3854eb5e2bed17e25817ebce77d420efe930b4b4,[status] 2024-08-22 12:12:15 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/10525325951) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,26,2,2,0,FALSE,https://github.com/theislab/graphcompass,26,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,8,3,4,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA @@ -132,11 +142,11 @@ theislab,moscot_not,theislab/moscot_not,3,2,8,1,FALSE,https://github.com/theisla theislab,moscot_notebooks,theislab/moscot_notebooks,6,1,4,3,FALSE,https://github.com/theislab/moscot_notebooks,6,NA,NA,NA theislab,moslin,theislab/moslin,9,1,0,1,FALSE,https://github.com/theislab/moslin,9,NA,NA,NA theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,7,2,0,3,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,7,NA,NA,NA -theislab,mubind,theislab/mubind,22,3,30,0,FALSE,https://github.com/theislab/mubind,22,cc7e67f322cb72f7b6a57c66d3d432209f640aa5,documentation (formatting),[![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10432291601) +theislab,mubind,theislab/mubind,22,3,30,0,FALSE,https://github.com/theislab/mubind,22,c06443dd5e36b5ed76bca4838ecfcbc3ca64190d,typo notebooks,[![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10524720790) theislab,mubind-benchmark,theislab/mubind-benchmark,0,2,19,0,FALSE,https://github.com/theislab/mubind-benchmark,0,NA,NA,NA theislab,multicpa,theislab/multicpa,13,2,1,2,FALSE,https://github.com/theislab/multicpa,13,NA,NA,NA theislab,multicpa-reproducibility,theislab/multicpa-reproducibility,0,2,0,0,FALSE,https://github.com/theislab/multicpa-reproducibility,0,NA,NA,NA -theislab,multigrate,theislab/multigrate,12,3,7,5,FALSE,https://github.com/theislab/multigrate,12,NA,NA,NA +theislab,multigrate,theislab/multigrate,13,3,7,6,FALSE,https://github.com/theislab/multigrate,13,NA,NA,NA theislab,multigrate_reproducibility,theislab/multigrate_reproducibility,2,1,0,0,FALSE,https://github.com/theislab/multigrate_reproducibility,2,NA,NA,NA theislab,multimil,theislab/multimil,14,5,3,1,FALSE,https://github.com/theislab/multimil,14,2bb4f90eff483df0b6deff73f505ed2db38fb08e,bumped the version,[![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/10163998577) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/10399053136) theislab,multimil_reproducibility,theislab/multimil_reproducibility,3,3,3,0,FALSE,https://github.com/theislab/multimil_reproducibility,3,NA,NA,NA @@ -149,7 +159,7 @@ theislab,ncem,theislab/ncem,102,6,27,13,FALSE,https://github.com/theislab/ncem,1 theislab,ncem_benchmarks,theislab/ncem_benchmarks,8,4,4,2,FALSE,https://github.com/theislab/ncem_benchmarks,8,NA,NA,NA theislab,ncem_tutorials,theislab/ncem_tutorials,11,4,6,0,FALSE,https://github.com/theislab/ncem_tutorials,11,NA,NA,NA theislab,neural_organoid_atlas,theislab/neural_organoid_atlas,10,4,2,1,FALSE,https://github.com/theislab/neural_organoid_atlas,10,NA,NA,NA -theislab,nicheformer,theislab/nicheformer,42,3,10,2,FALSE,https://github.com/theislab/nicheformer,42,NA,NA,NA +theislab,nicheformer,theislab/nicheformer,43,3,10,2,FALSE,https://github.com/theislab/nicheformer,43,NA,NA,NA theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimulation,0,3,0,1,FALSE,https://github.com/theislab/organoid_dexamethason_stimulation,0,NA,NA,NA theislab,paga,theislab/paga,198,10,23,33,FALSE,https://github.com/theislab/paga,198,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA @@ -158,7 +168,7 @@ theislab,pdac_analysis,theislab/pdac_analysis,0,2,0,0,FALSE,https://github.com/t theislab,pertpy-datasets,theislab/pertpy-datasets,1,3,1,1,FALSE,https://github.com/theislab/pertpy-datasets,1,NA,NA,NA theislab,pertpy-reproducibility,theislab/pertpy-reproducibility,0,2,0,0,FALSE,https://github.com/theislab/pertpy-reproducibility,0,NA,NA,NA theislab,perturbation-metrics,theislab/perturbation-metrics,4,2,1,0,FALSE,https://github.com/theislab/perturbation-metrics,4,NA,NA,NA -theislab,prophet,theislab/prophet,4,3,0,0,FALSE,https://github.com/theislab/prophet,4,NA,NA,NA +theislab,prophet,theislab/prophet,5,3,0,0,FALSE,https://github.com/theislab/prophet,5,NA,NA,NA theislab,prophet-reproducibility,theislab/prophet-reproducibility,0,3,0,0,FALSE,https://github.com/theislab/prophet-reproducibility,0,NA,NA,NA theislab,pseudodynamics,theislab/pseudodynamics,39,7,0,6,FALSE,https://github.com/theislab/pseudodynamics,39,NA,NA,NA theislab,quasiSCVI,theislab/quasiSCVI,0,2,0,0,FALSE,https://github.com/theislab/quasiSCVI,0,NA,NA,NA @@ -168,7 +178,7 @@ theislab,sc-best-practices-ce,theislab/sc-best-practices-ce,8,8,2,3,FALSE,https: theislab,sc-pert,theislab/sc-pert,140,5,6,10,FALSE,https://github.com/theislab/sc-pert,140,NA,NA,NA theislab,scAnalysisTutorial,theislab/scAnalysisTutorial,10,3,0,3,FALSE,https://github.com/theislab/scAnalysisTutorial,10,NA,NA,NA theislab,scArches-reproducibility,theislab/scArches-reproducibility,33,5,5,0,FALSE,https://github.com/theislab/scArches-reproducibility,33,NA,NA,NA -theislab,scCODA,theislab/scCODA,146,9,7,22,FALSE,https://github.com/theislab/scCODA,146,NA,NA,NA +theislab,scCODA,theislab/scCODA,146,9,7,23,FALSE,https://github.com/theislab/scCODA,146,NA,NA,NA theislab,scCODA_reproducibility,theislab/scCODA_reproducibility,7,5,0,1,FALSE,https://github.com/theislab/scCODA_reproducibility,7,NA,NA,NA theislab,scPoli_legacy,theislab/scPoli_legacy,2,5,0,0,FALSE,https://github.com/theislab/scPoli_legacy,2,NA,NA,NA theislab,scPoli_reproduce,theislab/scPoli_reproduce,13,3,2,4,FALSE,https://github.com/theislab/scPoli_reproduce,13,NA,NA,NA @@ -202,10 +212,10 @@ theislab,scib,theislab/scib,286,14,37,62,FALSE,https://github.com/theislab/scib, Co-authored-by: Michaela Müller <51025211+mumichae@users.noreply.github.com>",[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/10287985783) theislab,scib-pipeline,theislab/scib-pipeline,64,7,17,28,FALSE,https://github.com/theislab/scib-pipeline,64,NA,NA,NA theislab,scib-reproducibility,theislab/scib-reproducibility,52,6,3,14,FALSE,https://github.com/theislab/scib-reproducibility,52,NA,NA,NA -theislab,scvelo,theislab/scvelo,405,13,61,102,FALSE,https://github.com/theislab/scvelo,405,3fbce6ff6d644a44911091f498efa0c69f6b85b0,"Update densifying sparse array (#1263) +theislab,scvelo,theislab/scvelo,406,13,61,102,FALSE,https://github.com/theislab/scvelo,406,3fbce6ff6d644a44911091f498efa0c69f6b85b0,"Update densifying sparse array (#1263) Switch from `.A` to `.toarray()`",[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/9892975902) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/9892975897) -theislab,scvelo,theislab/scvelo,405,13,61,102,FALSE,https://github.com/theislab/scvelo,405,b2f31b345641efdccd39fbcb8c0beaa0014b4b88,"Update `pyproject.toml` (#1226) +theislab,scvelo,theislab/scvelo,406,13,61,102,FALSE,https://github.com/theislab/scvelo,406,b2f31b345641efdccd39fbcb8c0beaa0014b4b88,"Update `pyproject.toml` (#1226) Fix package directory.",[![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) theislab,scvelo_notebooks,theislab/scvelo_notebooks,29,2,4,12,FALSE,https://github.com/theislab/scvelo_notebooks,29,NA,NA,NA @@ -294,8 +304,8 @@ Signed-off-by: zethson --------- Signed-off-by: zethson ",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535081) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535098) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535076) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/10316535080) -theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,173,8,0,18,FALSE,https://github.com/theislab/single-cell-transformer-papers,173,NA,NA,NA -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1343,30,21,449,FALSE,https://github.com/theislab/single-cell-tutorial,1343,NA,NA,NA +theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,173,8,1,19,FALSE,https://github.com/theislab/single-cell-transformer-papers,173,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1344,30,21,449,FALSE,https://github.com/theislab/single-cell-tutorial,1344,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,5,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,5,NA,NA,NA theislab,spapros,theislab/spapros,23,3,13,6,FALSE,https://github.com/theislab/spapros,23,a7867793a6b1f49047fe33377bc2ae523a7bee6c,"[DEPENDABOT]: Bump pynndescent from 0.5.11 to 0.5.13 in /docs @@ -313,7 +323,7 @@ updated-dependencies: Signed-off-by: dependabot[bot] ",[![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/10459161813) 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