diff --git a/README.md b/README.md index 62e36cf..7a05e7a 100644 --- a/README.md +++ b/README.md @@ -2,19 +2,19 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2023-08-11 12:04:29 UTC +2023-08-12 12:07:54 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 450 | 16 | 43 | 78 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599630) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599625) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599624) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599627) | 84bc8a | | [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 450 | 16 | 43 | 78 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | | [theislab/scvelo](https://github.com/theislab/scvelo) | 347 | 15 | 60 | 96 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673828) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673829) | d89ca6 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 250 | 8 | 17 | 30 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) | 1287de | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 250 | 8 | 17 | 30 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313313) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313320) | d88b4d | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 250 | 8 | 18 | 30 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) | 1287de | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 250 | 8 | 18 | 30 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313313) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313320) | d88b4d | | [theislab/scib](https://github.com/theislab/scib) | 226 | 17 | 26 | 44 | [![](https://github.com/theislab/scib/workflows/Pre-commit/badge.svg)](https://github.com/theislab/scib/actions/runs/2276639868) | 96556a | | [theislab/scib](https://github.com/theislab/scib) | 226 | 17 | 26 | 44 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) | ed3e28 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 129 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4859312807) | 96fcf8 | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 129 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/5827346152) | c50240 | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 129 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/5838101363) | c50240 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 129 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4734866287) | d1a9e6 | | [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 97 | 6 | 16 | 20 | [![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/5055712904) | b56718 | | [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 96 | 7 | 14 | 14 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/5794060823) | 9b6e9d | @@ -23,21 +23,21 @@ GitHub Dashboard | [theislab/ncem](https://github.com/theislab/ncem) | 91 | 6 | 21 | 12 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | | [theislab/ncem](https://github.com/theislab/ncem) | 91 | 6 | 21 | 12 | [![](https://github.com/theislab/ncem/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/ncem/actions/runs/1764433339) | cd0ea2 | | [theislab/destiny](https://github.com/theislab/destiny) | 62 | 5 | 29 | 11 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/3288756982) | 8f083f | -| [theislab/moscot](https://github.com/theislab/moscot) | 60 | 4 | 28 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/5787079842) | 4ffcf1 | +| [theislab/moscot](https://github.com/theislab/moscot) | 60 | 4 | 29 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/5787079842) | 4ffcf1 | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 48 | 5 | 32 | 6 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 48 | 5 | 32 | 6 | [![](https://github.com/theislab/ehrapy/workflows/Build%20ehrapy%20Package/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423886) [![](https://github.com/theislab/ehrapy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423940) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423911) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423897) [![](https://github.com/theislab/ehrapy/workflows/Run%20ehrapy%20Tests/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423896) | a720b7 | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 48 | 5 | 32 | 6 | [![](https://github.com/theislab/ehrapy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/1954796372) | b50f73 | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 48 | 5 | 32 | 6 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5737904362) | f7843e | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 22 | 7 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5784170279) | 15d41f | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 22 | 7 | [![](https://github.com/theislab/pertpy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/pertpy/actions/runs/1954811240) | 2c96cd | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 22 | 7 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 22 | 7 | [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5801512233) | bbdf99 | -| [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 37 | 7 | 14 | 24 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 21 | 7 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5784170279) | 15d41f | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 21 | 7 | [![](https://github.com/theislab/pertpy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/pertpy/actions/runs/1954811240) | 2c96cd | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 21 | 7 | [![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5832543382) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5832543371) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5832543370) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5832543372) | 35e5c6 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 21 | 7 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | +| [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 37 | 7 | 14 | 25 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) | 11ffbb | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/.github/workflows/test.yml/badge.svg)](https://github.com/theislab/batchglm/actions/runs/1954556605) | aa879d | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Labeler/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3209792663) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3213182368) | e78395 | -| [theislab/spapros](https://github.com/theislab/spapros) | 18 | 3 | 23 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940143488) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466680) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466678) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/5827865952) | 28b974 | +| [theislab/spapros](https://github.com/theislab/spapros) | 18 | 3 | 23 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940143488) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466680) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466678) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/5838543927) | 28b974 | | [theislab/spapros](https://github.com/theislab/spapros) | 18 | 3 | 23 | 5 | [![](https://github.com/theislab/spapros/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940112493) | 32aa90 | | [theislab/mubind](https://github.com/theislab/mubind) | 16 | 2 | 30 | 0 | [![](https://github.com/theislab/mubind/workflows/pre-commit/badge.svg)](https://github.com/theislab/mubind/actions/runs/2495279924) [![](https://github.com/theislab/mubind/workflows/Test/badge.svg)](https://github.com/theislab/mubind/actions/runs/2495279925) | 0e727d | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 11 | 6 | 7 | 5 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/5794059584) | 86f284 | @@ -52,7 +52,7 @@ GitHub Dashboard | [theislab/bindome](https://github.com/theislab/bindome) | 1 | 3 | 5 | 1 | [![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) | 3cb12b | | [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 0 | 0 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369762) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369764) | 96c815 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/5832301184) | a4642d | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/5841158310) | 234412 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5570814130) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5570814133) | 2e23ba | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | @@ -69,7 +69,7 @@ GitHub Dashboard | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 163 | 9 | 104 | 22 | | [theislab/paga](https://github.com/theislab/paga) | 163 | 10 | 21 | 29 | | [theislab/kBET](https://github.com/theislab/kBET) | 131 | 9 | 8 | 23 | -| [theislab/scCODA](https://github.com/theislab/scCODA) | 116 | 9 | 9 | 21 | +| [theislab/scCODA](https://github.com/theislab/scCODA) | 117 | 9 | 9 | 21 | | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 102 | 6 | 5 | 7 | | [theislab/chemCPA](https://github.com/theislab/chemCPA) | 58 | 5 | 8 | 11 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 50 | 6 | 6 | 8 | diff --git a/index.html b/index.html index 243ccd6..9d0ee5a 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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Repos without Github Actions

- + diff --git a/repos.csv b/repos.csv index 1c5625d..f60bab6 100644 --- a/repos.csv +++ b/repos.csv @@ -77,8 +77,8 @@ Important cookietemple template update 2.1.1 released!",[![](https://github.com/ theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,3cb12b5e3c71749003718d8d1768e3b9790d8544,minor fixes,[![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) theislab,campa,theislab/campa,9,4,4,3,FALSE,https://github.com/theislab/campa,9,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,250,8,17,30,FALSE,https://github.com/theislab/cellrank,250,1287deed96ee4fa49aa50e948688e75c3d173870,Change core development order,[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) -theislab,cellrank,theislab/cellrank,250,8,17,30,FALSE,https://github.com/theislab/cellrank,250,d88b4d2fd00c658dd05534a2ed31964e0f2ca862,"Fix journal entry, small modifications (#1109)",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313313) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313320) +theislab,cellrank,theislab/cellrank,250,8,18,30,FALSE,https://github.com/theislab/cellrank,250,1287deed96ee4fa49aa50e948688e75c3d173870,Change core development order,[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) +theislab,cellrank,theislab/cellrank,250,8,18,30,FALSE,https://github.com/theislab/cellrank,250,d88b4d2fd00c658dd05534a2ed31964e0f2ca862,"Fix journal entry, small modifications (#1109)",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313313) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313320) theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,0,0,0,0,FALSE,https://github.com/theislab/cellrank2_reproducibility,0,96c815f78ecbb75d9dc12f0ee995851acf314add,"Add `lint.yml` (#40) Adds CI to check linting on push to `main` or when opeing a PR to merge @@ -124,7 +124,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,7,4,0,1,FALSE,http theislab,geome,theislab/geome,10,3,1,2,FALSE,https://github.com/theislab/geome,10,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update Automated template update from cookiecutter-scverse",[![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) -theislab,gh-dashboard,theislab/gh-dashboard,0,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,0,a4642deb538b68d7e43a3be8b9ec478d58da474e,[status] 2023-08-10 12:06:52 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/5832301184) +theislab,gh-dashboard,theislab/gh-dashboard,0,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,0,234412afc3a8fd4dd1f2049739aff81291717d95,[status] 2023-08-11 12:07:24 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/5841158310) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,greatpy,theislab/greatpy,8,3,3,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA theislab,gut_lineage,theislab/gut_lineage,2,3,0,3,FALSE,https://github.com/theislab/gut_lineage,2,NA,NA,NA @@ -158,7 +158,7 @@ theislab,intercode,theislab/intercode,6,3,1,1,FALSE,https://github.com/theislab/ theislab,ipsc_ipd_analysis,theislab/ipsc_ipd_analysis,0,3,0,0,FALSE,https://github.com/theislab/ipsc_ipd_analysis,0,NA,NA,NA theislab,kBET,theislab/kBET,131,9,8,23,FALSE,https://github.com/theislab/kBET,131,NA,NA,NA theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA -theislab,moscot,theislab/moscot,60,4,28,6,FALSE,https://github.com/theislab/moscot,60,4ffcf14551cfc2fcabd8b7835c49bdc3dcff9333,"Deps/update ott (#557) +theislab,moscot,theislab/moscot,60,4,29,6,FALSE,https://github.com/theislab/moscot,60,4ffcf14551cfc2fcabd8b7835c49bdc3dcff9333,"Deps/update ott (#557) * update notebooks @@ -212,75 +212,18 @@ theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimul theislab,paga,theislab/paga,163,10,21,29,FALSE,https://github.com/theislab/paga,163,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,3,3,0,5,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,3,NA,NA,NA -theislab,pertpy,theislab/pertpy,38,5,22,7,FALSE,https://github.com/theislab/pertpy,38,15d41f17a20056402fe58a27db5eeb73d887feff,Bump version from 0.5.0 to 0.6.0,[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5784170279) -theislab,pertpy,theislab/pertpy,38,5,22,7,FALSE,https://github.com/theislab/pertpy,38,2c96cd655aa7ee3f576fa238d14fc71255754c8f,cookietemple sync,[![](https://github.com/theislab/pertpy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/pertpy/actions/runs/1954811240) -theislab,pertpy,theislab/pertpy,38,5,22,7,FALSE,https://github.com/theislab/pertpy,38,404835c82f9a3d943b85973c10130303d090839d,"Revert ""Deleted JaxscgenPlot"" +theislab,pertpy,theislab/pertpy,38,5,21,7,FALSE,https://github.com/theislab/pertpy,38,15d41f17a20056402fe58a27db5eeb73d887feff,Bump version from 0.5.0 to 0.6.0,[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5784170279) +theislab,pertpy,theislab/pertpy,38,5,21,7,FALSE,https://github.com/theislab/pertpy,38,2c96cd655aa7ee3f576fa238d14fc71255754c8f,cookietemple sync,[![](https://github.com/theislab/pertpy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/pertpy/actions/runs/1954811240) +theislab,pertpy,theislab/pertpy,38,5,21,7,FALSE,https://github.com/theislab/pertpy,38,35e5c6919c024b6e5915477ab6f4d0f0e7f99a84,"Remove whitespace in bulk RNA expression (#337) -This reverts commit 161fc137c5a23320a5799a22cd4d7212b550bca9.",[![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) -theislab,pertpy,theislab/pertpy,38,5,22,7,FALSE,https://github.com/theislab/pertpy,38,bbdf99b1aee47155ba29744b2d714f5b2a7c06a8,"Update CellLineMetaData (#334) - -* update cell line annotation - -* add LookUp object - -* pass nox test - -* fix test - -* keep downloaded files - -* improve error message and lookup initialize - -* add annotate_from_gdsc - -* add metadata source in the docstring - -* fix typo - -* update test script and speed up downloading metadata - -* add remotezip dependency - -* parametrize Pytest fixture - -* fix import error - -* poetry update - -Signed-off-by: zethson - -* Fix fixture - -Signed-off-by: zethson +* remove whitespace in bulk RNA annotation -* fix test error +* reformat -* Refactor - -Signed-off-by: zethson - -* Refactor - -Signed-off-by: zethson - -* Refactor - -Signed-off-by: zethson - -* improve LookUp object - -* add openpyxl - -Signed-off-by: zethson - -* update lookup - -* replace dict with namedtuple - ---------- - -Signed-off-by: zethson -Co-authored-by: Lukas Heumos ",[![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5801512233) +* add details of random whitespace issue",[![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5832543382) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5832543371) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5832543370) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5832543372) +theislab,pertpy,theislab/pertpy,38,5,21,7,FALSE,https://github.com/theislab/pertpy,38,404835c82f9a3d943b85973c10130303d090839d,"Revert ""Deleted JaxscgenPlot"" + +This reverts commit 161fc137c5a23320a5799a22cd4d7212b550bca9.",[![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) theislab,pertpy-datasets,theislab/pertpy-datasets,1,4,0,1,FALSE,https://github.com/theislab/pertpy-datasets,1,NA,NA,NA theislab,pertpy-tutorials,theislab/pertpy-tutorials,3,5,1,4,FALSE,https://github.com/theislab/pertpy-tutorials,3,NA,NA,NA theislab,perturbation-metrics,theislab/perturbation-metrics,0,2,0,0,FALSE,https://github.com/theislab/perturbation-metrics,0,NA,NA,NA @@ -291,7 +234,7 @@ theislab,sc-best-practices-ce,theislab/sc-best-practices-ce,5,7,2,3,FALSE,https: theislab,sc-pert,theislab/sc-pert,102,6,5,7,FALSE,https://github.com/theislab/sc-pert,102,NA,NA,NA theislab,scAnalysisTutorial,theislab/scAnalysisTutorial,10,3,0,3,FALSE,https://github.com/theislab/scAnalysisTutorial,10,NA,NA,NA theislab,scArches-reproducibility,theislab/scArches-reproducibility,26,5,5,2,FALSE,https://github.com/theislab/scArches-reproducibility,26,NA,NA,NA -theislab,scCODA,theislab/scCODA,116,9,9,21,FALSE,https://github.com/theislab/scCODA,116,NA,NA,NA +theislab,scCODA,theislab/scCODA,117,9,9,21,FALSE,https://github.com/theislab/scCODA,117,NA,NA,NA theislab,scCODA_reproducibility,theislab/scCODA_reproducibility,6,5,0,1,FALSE,https://github.com/theislab/scCODA_reproducibility,6,NA,NA,NA theislab,scPoli_legacy,theislab/scPoli_legacy,1,5,0,0,FALSE,https://github.com/theislab/scPoli_legacy,1,NA,NA,NA theislab,scPoli_reproduce,theislab/scPoli_reproduce,4,3,1,2,FALSE,https://github.com/theislab/scPoli_reproduce,4,NA,NA,NA @@ -313,14 +256,14 @@ theislab,scgen,theislab/scgen,208,10,15,47,FALSE,https://github.com/theislab/scg theislab,scgen-reproducibility,theislab/scgen-reproducibility,15,4,5,8,FALSE,https://github.com/theislab/scgen-reproducibility,15,NA,NA,NA theislab,scib,theislab/scib,226,17,26,44,FALSE,https://github.com/theislab/scib,NA,96556af27d94053a0e25f44383838e9e706683bc,move flake8 args to setup.cfg,[![](https://github.com/theislab/scib/workflows/Pre-commit/badge.svg)](https://github.com/theislab/scib/actions/runs/2276639868) theislab,scib,theislab/scib,226,17,26,44,FALSE,https://github.com/theislab/scib,NA,ed3e2846414ca1e3dc07552c0eef1e68d82230d4,Bump version: 1.1.3 → 1.1.4,[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) -theislab,scib-pipeline,theislab/scib-pipeline,37,7,14,24,FALSE,https://github.com/theislab/scib-pipeline,37,1180bcb35829d6d2984202268b4d1d11c511e20c,Merge branch 'fix/igraph_dependency' into rpy2_unpin,[![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) +theislab,scib-pipeline,theislab/scib-pipeline,37,7,14,25,FALSE,https://github.com/theislab/scib-pipeline,37,1180bcb35829d6d2984202268b4d1d11c511e20c,Merge branch 'fix/igraph_dependency' into rpy2_unpin,[![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) theislab,scib-reproducibility,theislab/scib-reproducibility,40,6,2,11,FALSE,https://github.com/theislab/scib-reproducibility,40,NA,NA,NA theislab,scvelo,theislab/scvelo,347,15,60,96,FALSE,https://github.com/theislab/scvelo,347,d89ca6aecbe93256fbcdd8a521fdee2b9f2a673a,Add metabolic labeling inference (#1103),[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673828) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673829) theislab,scvelo_notebooks,theislab/scvelo_notebooks,23,2,2,12,FALSE,https://github.com/theislab/scvelo_notebooks,23,NA,NA,NA theislab,sfaira,theislab/sfaira,129,8,177,13,FALSE,https://github.com/theislab/sfaira,129,96fcf8f55c9865728c8032bec35e8d9e836e7001,Merge branch 'dev' into data/d10_1101_2022_03_10_483747,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4859312807) theislab,sfaira,theislab/sfaira,129,8,177,13,FALSE,https://github.com/theislab/sfaira,129,c50240a74530e614ab7681bf9c63b04cb815b361,"Merge pull request #589 from theislab/release -Release 0.3.12",[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/5827346152) +Release 0.3.12",[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/5838101363) theislab,sfaira,theislab/sfaira,129,8,177,13,FALSE,https://github.com/theislab/sfaira,129,d1a9e6c4c7974abe685263206671a452f8e84c6f,fix miura organ annotation,[![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4734866287) theislab,sfaira-portal,theislab/sfaira-portal,0,4,2,0,FALSE,https://github.com/theislab/sfaira-portal,0,a06e268a61598ca1b7244d52f2e6246f48d6541d,fix typo,[![](https://github.com/theislab/sfaira-portal/workflows/Build-site/badge.svg)](https://github.com/theislab/sfaira-portal/actions/runs/1739478412) theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theislab/sfaira-site,0,NA,NA,NA @@ -446,7 +389,7 @@ theislab,single-cell-tutorial,theislab/single-cell-tutorial,1117,30,21,415,FALSE theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,4,4,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA theislab,spapros,theislab/spapros,18,3,23,5,FALSE,https://github.com/theislab/spapros,18,28b974a43a8745d7cb0518b55fd68ce63b044ced,"Merge pull request #266 from theislab/development -New version release",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940143488) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466680) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466678) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/5827865952) +New version release",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940143488) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466680) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466678) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/5838543927) theislab,spapros,theislab/spapros,18,3,23,5,FALSE,https://github.com/theislab/spapros,18,32aa90e29ff70afa4c001d47e80bcbd6e4d96d19,Bump version from 0.1.2 to 0.1.3,[![](https://github.com/theislab/spapros/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940112493) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,NA,NA,NA theislab,spapros-smk,theislab/spapros-smk,0,2,0,0,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA
theislab/cellrank 250 81718 30 1287de theislab/cellrank 250 81718 30 8 177 13 c50240
theislab/moscot 60 42829 6 4ffcf1 theislab/pertpy 38 52221 7 15d41f theislab/pertpy 38 52221 7 2c96cd theislab/pertpy 38 52221 7<a href=“https://github.com/theislab/pertpy/commit/404835c82f9a3d943b85973c10130303d090839d” -title=“Revert”Deleted JaxscgenPlot”“>404835 + + +35e5c6
theislab/pertpy 38 52221 7bbdf99<a href=“https://github.com/theislab/pertpy/commit/404835c82f9a3d943b85973c10130303d090839d” +title=“Revert”Deleted JaxscgenPlot”“>404835
theislab/scib-pipeline 37 7 142425 1180bc
- 28b974
2 0 0a4642d234412
theislab/idtrack
theislab/scCODA116117 9 9 21