diff --git a/README.md b/README.md index d844ee4..62e36cf 100644 --- a/README.md +++ b/README.md @@ -2,80 +2,80 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2023-08-10 12:04:23 UTC +2023-08-11 12:04:29 UTC -| Repo | Stars | Subscribers | Issues | Forks | Status | Commit | -|:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 448 | 16 | 43 | 77 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599630) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599625) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599624) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599627) | 84bc8a | -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 448 | 16 | 43 | 77 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 346 | 15 | 60 | 96 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673828) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673829) | d89ca6 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 250 | 8 | 18 | 30 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) | 1287de | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 250 | 8 | 18 | 30 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313313) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313320) | d88b4d | -| [theislab/scib](https://github.com/theislab/scib) | 226 | 17 | 26 | 44 | [![](https://github.com/theislab/scib/workflows/Pre-commit/badge.svg)](https://github.com/theislab/scib/actions/runs/2276639868) | 96556a | -| [theislab/scib](https://github.com/theislab/scib) | 226 | 17 | 26 | 44 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) [![](https://github.com/theislab/scib/workflows/Test/badge.svg)](https://github.com/theislab/scib/actions/runs/5647380554) | ed3e28 | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 129 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4859312807) | 96fcf8 | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 129 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/5815331040) | c50240 | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 129 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4734866287) | d1a9e6 | -| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 97 | 6 | 16 | 20 | [![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/5055712904) | b56718 | -| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 96 | 7 | 14 | 14 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/5794060823) | 9b6e9d | -| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 96 | 7 | 14 | 14 | [![](https://github.com/theislab/anndata2ri/workflows/Publish%20Python%20Package/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/5738419497) | ae804b | -| [theislab/ncem](https://github.com/theislab/ncem) | 91 | 6 | 21 | 12 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/5397747238) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/5397747236) | 0404ba | -| [theislab/ncem](https://github.com/theislab/ncem) | 91 | 6 | 21 | 12 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | -| [theislab/ncem](https://github.com/theislab/ncem) | 91 | 6 | 21 | 12 | [![](https://github.com/theislab/ncem/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/ncem/actions/runs/1764433339) | cd0ea2 | -| [theislab/destiny](https://github.com/theislab/destiny) | 62 | 5 | 29 | 11 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/3288756982) | 8f083f | -| [theislab/moscot](https://github.com/theislab/moscot) | 60 | 4 | 28 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/5787079842) | 4ffcf1 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 48 | 5 | 35 | 6 | [![](https://github.com/theislab/ehrapy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5819617121) | 35fc12 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 48 | 5 | 35 | 6 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 48 | 5 | 35 | 6 | [![](https://github.com/theislab/ehrapy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/1954796372) | b50f73 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 48 | 5 | 35 | 6 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5737904362) | f7843e | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 22 | 7 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5784170279) | 15d41f | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 22 | 7 | [![](https://github.com/theislab/pertpy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/pertpy/actions/runs/1954811240) | 2c96cd | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 22 | 7 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 22 | 7 | [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5801512233) | bbdf99 | -| [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 37 | 7 | 14 | 24 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | -| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) | 11ffbb | -| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/.github/workflows/test.yml/badge.svg)](https://github.com/theislab/batchglm/actions/runs/1954556605) | aa879d | -| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Labeler/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3209792663) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | -| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3213182368) | e78395 | -| [theislab/spapros](https://github.com/theislab/spapros) | 18 | 3 | 23 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940143488) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466680) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466678) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/5815875793) | 28b974 | -| [theislab/spapros](https://github.com/theislab/spapros) | 18 | 3 | 23 | 5 | [![](https://github.com/theislab/spapros/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940112493) | 32aa90 | -| [theislab/mubind](https://github.com/theislab/mubind) | 16 | 2 | 30 | 0 | [![](https://github.com/theislab/mubind/workflows/pre-commit/badge.svg)](https://github.com/theislab/mubind/actions/runs/2495279924) [![](https://github.com/theislab/mubind/workflows/Test/badge.svg)](https://github.com/theislab/mubind/actions/runs/2495279925) | 0e727d | -| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 11 | 6 | 7 | 5 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/5794059584) | 86f284 | -| [theislab/geome](https://github.com/theislab/geome) | 10 | 3 | 1 | 2 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | -| [theislab/hadge](https://github.com/theislab/hadge) | 8 | 2 | 1 | 2 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/5787046249) [![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/5787046250) | b00158 | -| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/5779565520) | bd10c2 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 5 | 1 | 2 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/5779574639) | f520dc | -| [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 4 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/4510904353) | cb7707 | -| [theislab/augurpy](https://github.com/theislab/augurpy) | 2 | 2 | 10 | 0 | [![](https://github.com/theislab/augurpy/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/augurpy/actions/runs/1680337694) | 1ea5dc | -| [theislab/augurpy](https://github.com/theislab/augurpy) | 2 | 2 | 10 | 0 | [![](https://github.com/theislab/augurpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/augurpy/actions/runs/2052235258) [![](https://github.com/theislab/augurpy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/augurpy/actions/runs/2052235256) | 8a5e8a | -| [theislab/batch_correction_cellpainting](https://github.com/theislab/batch_correction_cellpainting) | 1 | 1 | 12 | 0 | [![](https://github.com/theislab/batch_correction_cellpainting/workflows/PR%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5820295957) [![](https://github.com/theislab/batch_correction_cellpainting/workflows/Package%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5820295959) | c18a8f | -| [theislab/bindome](https://github.com/theislab/bindome) | 1 | 3 | 5 | 1 | [![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) | 3cb12b | -| [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | -| [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 0 | 0 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369762) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369764) | 96c815 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/5820794015) | 41d81a | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5570814130) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5570814133) | 2e23ba | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | -| [theislab/sfaira-portal](https://github.com/theislab/sfaira-portal) | 0 | 4 | 2 | 0 | [![](https://github.com/theislab/sfaira-portal/workflows/Build-site/badge.svg)](https://github.com/theislab/sfaira-portal/actions/runs/1739478412) | a06e26 | +| Repo | Stars | Subscribers | Issues | Forks | Status | Commit | +|:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 450 | 16 | 43 | 78 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599630) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599625) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599624) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599627) | 84bc8a | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 450 | 16 | 43 | 78 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | +| [theislab/scvelo](https://github.com/theislab/scvelo) | 347 | 15 | 60 | 96 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673828) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673829) | d89ca6 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 250 | 8 | 17 | 30 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) | 1287de | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 250 | 8 | 17 | 30 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313313) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313320) | d88b4d | +| [theislab/scib](https://github.com/theislab/scib) | 226 | 17 | 26 | 44 | [![](https://github.com/theislab/scib/workflows/Pre-commit/badge.svg)](https://github.com/theislab/scib/actions/runs/2276639868) | 96556a | +| [theislab/scib](https://github.com/theislab/scib) | 226 | 17 | 26 | 44 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) | ed3e28 | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 129 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4859312807) | 96fcf8 | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 129 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/5827346152) | c50240 | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 129 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4734866287) | d1a9e6 | +| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 97 | 6 | 16 | 20 | [![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/5055712904) | b56718 | +| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 96 | 7 | 14 | 14 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/5794060823) | 9b6e9d | +| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 96 | 7 | 14 | 14 | [![](https://github.com/theislab/anndata2ri/workflows/Publish%20Python%20Package/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/5738419497) | ae804b | +| [theislab/ncem](https://github.com/theislab/ncem) | 91 | 6 | 21 | 12 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/5397747238) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/5397747236) | 0404ba | +| [theislab/ncem](https://github.com/theislab/ncem) | 91 | 6 | 21 | 12 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | +| [theislab/ncem](https://github.com/theislab/ncem) | 91 | 6 | 21 | 12 | [![](https://github.com/theislab/ncem/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/ncem/actions/runs/1764433339) | cd0ea2 | +| [theislab/destiny](https://github.com/theislab/destiny) | 62 | 5 | 29 | 11 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/3288756982) | 8f083f | +| [theislab/moscot](https://github.com/theislab/moscot) | 60 | 4 | 28 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/5787079842) | 4ffcf1 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 48 | 5 | 32 | 6 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 48 | 5 | 32 | 6 | [![](https://github.com/theislab/ehrapy/workflows/Build%20ehrapy%20Package/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423886) [![](https://github.com/theislab/ehrapy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423940) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423911) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423897) [![](https://github.com/theislab/ehrapy/workflows/Run%20ehrapy%20Tests/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423896) | a720b7 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 48 | 5 | 32 | 6 | [![](https://github.com/theislab/ehrapy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/1954796372) | b50f73 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 48 | 5 | 32 | 6 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5737904362) | f7843e | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 22 | 7 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5784170279) | 15d41f | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 22 | 7 | [![](https://github.com/theislab/pertpy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/pertpy/actions/runs/1954811240) | 2c96cd | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 22 | 7 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 22 | 7 | [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5801512233) | bbdf99 | +| [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 37 | 7 | 14 | 24 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | +| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) | 11ffbb | +| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/.github/workflows/test.yml/badge.svg)](https://github.com/theislab/batchglm/actions/runs/1954556605) | aa879d | +| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Labeler/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3209792663) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | +| [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3213182368) | e78395 | +| [theislab/spapros](https://github.com/theislab/spapros) | 18 | 3 | 23 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940143488) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466680) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466678) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/5827865952) | 28b974 | +| [theislab/spapros](https://github.com/theislab/spapros) | 18 | 3 | 23 | 5 | [![](https://github.com/theislab/spapros/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940112493) | 32aa90 | +| [theislab/mubind](https://github.com/theislab/mubind) | 16 | 2 | 30 | 0 | [![](https://github.com/theislab/mubind/workflows/pre-commit/badge.svg)](https://github.com/theislab/mubind/actions/runs/2495279924) [![](https://github.com/theislab/mubind/workflows/Test/badge.svg)](https://github.com/theislab/mubind/actions/runs/2495279925) | 0e727d | +| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 11 | 6 | 7 | 5 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/5794059584) | 86f284 | +| [theislab/geome](https://github.com/theislab/geome) | 10 | 3 | 1 | 2 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | +| [theislab/hadge](https://github.com/theislab/hadge) | 8 | 2 | 1 | 2 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/5787046249) [![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/5787046250) | b00158 | +| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/5779565520) | bd10c2 | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 5 | 1 | 2 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/5779574639) | f520dc | +| [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 4 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/4510904353) | cb7707 | +| [theislab/augurpy](https://github.com/theislab/augurpy) | 2 | 2 | 10 | 0 | [![](https://github.com/theislab/augurpy/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/augurpy/actions/runs/1680337694) | 1ea5dc | +| [theislab/augurpy](https://github.com/theislab/augurpy) | 2 | 2 | 10 | 0 | [![](https://github.com/theislab/augurpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/augurpy/actions/runs/2052235258) [![](https://github.com/theislab/augurpy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/augurpy/actions/runs/2052235256) | 8a5e8a | +| [theislab/batch_correction_cellpainting](https://github.com/theislab/batch_correction_cellpainting) | 1 | 1 | 12 | 0 | [![](https://github.com/theislab/batch_correction_cellpainting/workflows/PR%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5831733628) [![](https://github.com/theislab/batch_correction_cellpainting/workflows/Package%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5831733629) | 6eef34 | +| [theislab/bindome](https://github.com/theislab/bindome) | 1 | 3 | 5 | 1 | [![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) | 3cb12b | +| [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | +| [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 0 | 0 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369762) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369764) | 96c815 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/5832301184) | a4642d | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5570814130) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5570814133) | 2e23ba | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | +| [theislab/sfaira-portal](https://github.com/theislab/sfaira-portal) | 0 | 4 | 2 | 0 | [![](https://github.com/theislab/sfaira-portal/workflows/Build-site/badge.svg)](https://github.com/theislab/sfaira-portal/actions/runs/1739478412) | a06e26 | ## Repos without Github Actions | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1114 | 30 | 21 | 414 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1117 | 30 | 21 | 415 | | [theislab/scarches](https://github.com/theislab/scarches) | 268 | 14 | 26 | 45 | | [theislab/dca](https://github.com/theislab/dca) | 222 | 12 | 29 | 67 | -| [theislab/scgen](https://github.com/theislab/scgen) | 209 | 10 | 15 | 47 | +| [theislab/scgen](https://github.com/theislab/scgen) | 208 | 10 | 15 | 47 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 163 | 9 | 104 | 22 | -| [theislab/paga](https://github.com/theislab/paga) | 163 | 10 | 21 | 28 | -| [theislab/kBET](https://github.com/theislab/kBET) | 130 | 9 | 8 | 23 | -| [theislab/scCODA](https://github.com/theislab/scCODA) | 116 | 9 | 9 | 20 | +| [theislab/paga](https://github.com/theislab/paga) | 163 | 10 | 21 | 29 | +| [theislab/kBET](https://github.com/theislab/kBET) | 131 | 9 | 8 | 23 | +| [theislab/scCODA](https://github.com/theislab/scCODA) | 116 | 9 | 9 | 21 | | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 102 | 6 | 5 | 7 | | [theislab/chemCPA](https://github.com/theislab/chemCPA) | 58 | 5 | 8 | 11 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 50 | 6 | 6 | 8 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 49 | 7 | 2 | 8 | | [theislab/pseudodynamics](https://github.com/theislab/pseudodynamics) | 40 | 7 | 0 | 6 | -| [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 39 | 6 | 2 | 10 | +| [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 40 | 6 | 2 | 11 | | [theislab/spatial_scog_workshop_2022](https://github.com/theislab/spatial_scog_workshop_2022) | 37 | 9 | 0 | 24 | | [theislab/tcellmatch](https://github.com/theislab/tcellmatch) | 35 | 9 | 3 | 7 | | [theislab/cpa](https://github.com/theislab/cpa) | 33 | 4 | 14 | 9 | @@ -132,7 +132,7 @@ GitHub Dashboard | [theislab/LODE](https://github.com/theislab/LODE) | 4 | 2 | 9 | 0 | | [theislab/scPoli_reproduce](https://github.com/theislab/scPoli_reproduce) | 4 | 3 | 1 | 2 | | [theislab/covid-perturbation](https://github.com/theislab/covid-perturbation) | 3 | 3 | 0 | 0 | -| [theislab/ehrapy-tutorials](https://github.com/theislab/ehrapy-tutorials) | 3 | 2 | 3 | 1 | +| [theislab/ehrapy-tutorials](https://github.com/theislab/ehrapy-tutorials) | 3 | 2 | 2 | 1 | | [theislab/IMPA](https://github.com/theislab/IMPA) | 3 | 2 | 0 | 1 | | [theislab/multires-consensus-clustering](https://github.com/theislab/multires-consensus-clustering) | 3 | 4 | 9 | 0 | | [theislab/nbconvertR](https://github.com/theislab/nbconvertR) | 3 | 3 | 1 | 2 | diff --git a/index.html b/index.html index 2309da0..243ccd6 100644 --- a/index.html +++ 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- + diff --git a/repos.csv b/repos.csv index 18de4e1..1c5625d 100644 --- a/repos.csv +++ b/repos.csv @@ -53,7 +53,7 @@ Signed-off-by: dependabot[bot] ",[![](https://github.com/the theislab,autoencoderPS,theislab/autoencoderPS,1,3,0,2,FALSE,https://github.com/theislab/autoencoderPS,1,NA,NA,NA theislab,bartSeq,theislab/bartSeq,1,5,1,5,FALSE,https://github.com/theislab/bartSeq,1,NA,NA,NA theislab,bartseq-pipeline,theislab/bartseq-pipeline,2,4,0,3,FALSE,https://github.com/theislab/bartseq-pipeline,2,NA,NA,NA -theislab,batch_correction_cellpainting,theislab/batch_correction_cellpainting,1,1,12,0,FALSE,https://github.com/theislab/batch_correction_cellpainting,1,c18a8fa298cdcfec731101f204620e2311744a76,change column name,[![](https://github.com/theislab/batch_correction_cellpainting/workflows/PR%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5820295957) [![](https://github.com/theislab/batch_correction_cellpainting/workflows/Package%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5820295959) +theislab,batch_correction_cellpainting,theislab/batch_correction_cellpainting,1,1,12,0,FALSE,https://github.com/theislab/batch_correction_cellpainting,1,6eef34b8141710bca3e88e320d81a5f8a6ed9025,Add cytominer normalization,[![](https://github.com/theislab/batch_correction_cellpainting/workflows/PR%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5831733628) [![](https://github.com/theislab/batch_correction_cellpainting/workflows/Package%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5831733629) theislab,batchglm,theislab/batchglm,26,4,46,9,FALSE,https://github.com/theislab/batchglm,26,11ffbbd5bd63dde1db9adc3b7c78a90d978fa1a6,"[DEPENDABOT]: Bump dask from 2021.3.0 to 2023.3.0 in /docs Bumps [dask](https://github.com/dask/dask) from 2021.3.0 to 2023.3.0. @@ -77,8 +77,8 @@ Important cookietemple template update 2.1.1 released!",[![](https://github.com/ theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,3cb12b5e3c71749003718d8d1768e3b9790d8544,minor fixes,[![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) theislab,campa,theislab/campa,9,4,4,3,FALSE,https://github.com/theislab/campa,9,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,250,8,18,30,FALSE,https://github.com/theislab/cellrank,250,1287deed96ee4fa49aa50e948688e75c3d173870,Change core development order,[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) -theislab,cellrank,theislab/cellrank,250,8,18,30,FALSE,https://github.com/theislab/cellrank,250,d88b4d2fd00c658dd05534a2ed31964e0f2ca862,"Fix journal entry, small modifications (#1109)",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313313) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313320) +theislab,cellrank,theislab/cellrank,250,8,17,30,FALSE,https://github.com/theislab/cellrank,250,1287deed96ee4fa49aa50e948688e75c3d173870,Change core development order,[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) +theislab,cellrank,theislab/cellrank,250,8,17,30,FALSE,https://github.com/theislab/cellrank,250,d88b4d2fd00c658dd05534a2ed31964e0f2ca862,"Fix journal entry, small modifications (#1109)",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313313) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313320) theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,0,0,0,0,FALSE,https://github.com/theislab/cellrank2_reproducibility,0,96c815f78ecbb75d9dc12f0ee995851acf314add,"Add `lint.yml` (#40) Adds CI to check linting on push to `main` or when opeing a PR to merge @@ -102,18 +102,18 @@ theislab,diffxpy,theislab/diffxpy,163,9,104,22,FALSE,https://github.com/theislab theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,9,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,9,NA,NA,NA theislab,disent,theislab/disent,5,3,0,0,FALSE,https://github.com/theislab/disent,5,NA,NA,NA theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA -theislab,ehrapy,theislab/ehrapy,48,5,35,6,FALSE,https://github.com/theislab/ehrapy,48,35fc12b2a43021068ed14fc815c696c6510369ae,"Use fixtures for preprocessing tests - -Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5819617121) -theislab,ehrapy,theislab/ehrapy,48,5,35,6,FALSE,https://github.com/theislab/ehrapy,48,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows +theislab,ehrapy,theislab/ehrapy,48,5,32,6,FALSE,https://github.com/theislab/ehrapy,48,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) -theislab,ehrapy,theislab/ehrapy,48,5,35,6,FALSE,https://github.com/theislab/ehrapy,48,b50f734e21ffe5f9c1db7a5a5c25f1c5d071543f,cookietemple sync,[![](https://github.com/theislab/ehrapy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/1954796372) -theislab,ehrapy,theislab/ehrapy,48,5,35,6,FALSE,https://github.com/theislab/ehrapy,48,f7843e917df3bbe26bf1ef4d4cbcf5276fda3f7a,Bump version from 0.5.0 to 0.6.0,[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5737904362) +theislab,ehrapy,theislab/ehrapy,48,5,32,6,FALSE,https://github.com/theislab/ehrapy,48,a720b7d3a390b63c8d6035fadd1526433ef78845,"submodule + +Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Build%20ehrapy%20Package/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423886) [![](https://github.com/theislab/ehrapy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423940) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423911) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423897) [![](https://github.com/theislab/ehrapy/workflows/Run%20ehrapy%20Tests/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423896) +theislab,ehrapy,theislab/ehrapy,48,5,32,6,FALSE,https://github.com/theislab/ehrapy,48,b50f734e21ffe5f9c1db7a5a5c25f1c5d071543f,cookietemple sync,[![](https://github.com/theislab/ehrapy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/1954796372) +theislab,ehrapy,theislab/ehrapy,48,5,32,6,FALSE,https://github.com/theislab/ehrapy,48,f7843e917df3bbe26bf1ef4d4cbcf5276fda3f7a,Bump version from 0.5.0 to 0.6.0,[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5737904362) theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA theislab,ehrapy-datasets,theislab/ehrapy-datasets,4,2,0,2,FALSE,https://github.com/theislab/ehrapy-datasets,4,cb7707afc4523a317cfb30c1d101091adfaa44cd,Add mimic-2 to CI,[![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/4510904353) theislab,ehrapy-site,theislab/ehrapy-site,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-site,1,NA,NA,NA -theislab,ehrapy-tutorials,theislab/ehrapy-tutorials,3,2,3,1,FALSE,https://github.com/theislab/ehrapy-tutorials,3,NA,NA,NA +theislab,ehrapy-tutorials,theislab/ehrapy-tutorials,3,2,2,1,FALSE,https://github.com/theislab/ehrapy-tutorials,3,NA,NA,NA theislab,enrichment_analysis_celltype,theislab/enrichment_analysis_celltype,9,5,0,4,FALSE,https://github.com/theislab/enrichment_analysis_celltype,9,NA,NA,NA theislab,epicardiods_analysis,theislab/epicardiods_analysis,2,2,1,0,FALSE,https://github.com/theislab/epicardiods_analysis,2,NA,NA,NA theislab,expiMap_reproducibility,theislab/expiMap_reproducibility,7,5,3,3,FALSE,https://github.com/theislab/expiMap_reproducibility,7,NA,NA,NA @@ -124,7 +124,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,7,4,0,1,FALSE,http theislab,geome,theislab/geome,10,3,1,2,FALSE,https://github.com/theislab/geome,10,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update Automated template update from cookiecutter-scverse",[![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) -theislab,gh-dashboard,theislab/gh-dashboard,0,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,0,41d81afbe0cb83019ddc1d4c4ca52d6205f5a399,[status] 2023-08-09 12:07:27 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/5820794015) +theislab,gh-dashboard,theislab/gh-dashboard,0,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,0,a4642deb538b68d7e43a3be8b9ec478d58da474e,[status] 2023-08-10 12:06:52 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/5832301184) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,greatpy,theislab/greatpy,8,3,3,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA theislab,gut_lineage,theislab/gut_lineage,2,3,0,3,FALSE,https://github.com/theislab/gut_lineage,2,NA,NA,NA @@ -156,7 +156,7 @@ theislab,interaction-tools,theislab/interaction-tools,1,4,0,0,FALSE,https://gith theislab,interactive_plotting,theislab/interactive_plotting,19,4,10,7,FALSE,https://github.com/theislab/interactive_plotting,19,NA,NA,NA theislab,intercode,theislab/intercode,6,3,1,1,FALSE,https://github.com/theislab/intercode,6,NA,NA,NA theislab,ipsc_ipd_analysis,theislab/ipsc_ipd_analysis,0,3,0,0,FALSE,https://github.com/theislab/ipsc_ipd_analysis,0,NA,NA,NA -theislab,kBET,theislab/kBET,130,9,8,23,FALSE,https://github.com/theislab/kBET,130,NA,NA,NA +theislab,kBET,theislab/kBET,131,9,8,23,FALSE,https://github.com/theislab/kBET,131,NA,NA,NA theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA theislab,moscot,theislab/moscot,60,4,28,6,FALSE,https://github.com/theislab/moscot,60,4ffcf14551cfc2fcabd8b7835c49bdc3dcff9333,"Deps/update ott (#557) @@ -209,7 +209,7 @@ theislab,ncem,theislab/ncem,91,6,21,12,FALSE,https://github.com/theislab/ncem,91 theislab,ncem_benchmarks,theislab/ncem_benchmarks,8,4,4,2,FALSE,https://github.com/theislab/ncem_benchmarks,8,NA,NA,NA theislab,ncem_tutorials,theislab/ncem_tutorials,9,4,5,0,FALSE,https://github.com/theislab/ncem_tutorials,9,NA,NA,NA theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimulation,0,3,0,0,FALSE,https://github.com/theislab/organoid_dexamethason_stimulation,0,NA,NA,NA -theislab,paga,theislab/paga,163,10,21,28,FALSE,https://github.com/theislab/paga,163,NA,NA,NA +theislab,paga,theislab/paga,163,10,21,29,FALSE,https://github.com/theislab/paga,163,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,3,3,0,5,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,3,NA,NA,NA theislab,pertpy,theislab/pertpy,38,5,22,7,FALSE,https://github.com/theislab/pertpy,38,15d41f17a20056402fe58a27db5eeb73d887feff,Bump version from 0.5.0 to 0.6.0,[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5784170279) @@ -291,7 +291,7 @@ theislab,sc-best-practices-ce,theislab/sc-best-practices-ce,5,7,2,3,FALSE,https: theislab,sc-pert,theislab/sc-pert,102,6,5,7,FALSE,https://github.com/theislab/sc-pert,102,NA,NA,NA theislab,scAnalysisTutorial,theislab/scAnalysisTutorial,10,3,0,3,FALSE,https://github.com/theislab/scAnalysisTutorial,10,NA,NA,NA theislab,scArches-reproducibility,theislab/scArches-reproducibility,26,5,5,2,FALSE,https://github.com/theislab/scArches-reproducibility,26,NA,NA,NA -theislab,scCODA,theislab/scCODA,116,9,9,20,FALSE,https://github.com/theislab/scCODA,116,NA,NA,NA +theislab,scCODA,theislab/scCODA,116,9,9,21,FALSE,https://github.com/theislab/scCODA,116,NA,NA,NA theislab,scCODA_reproducibility,theislab/scCODA_reproducibility,6,5,0,1,FALSE,https://github.com/theislab/scCODA_reproducibility,6,NA,NA,NA theislab,scPoli_legacy,theislab/scPoli_legacy,1,5,0,0,FALSE,https://github.com/theislab/scPoli_legacy,1,NA,NA,NA theislab,scPoli_reproduce,theislab/scPoli_reproduce,4,3,1,2,FALSE,https://github.com/theislab/scPoli_reproduce,4,NA,NA,NA @@ -309,26 +309,26 @@ Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.gi theislab,scarches,theislab/scarches,268,14,26,45,FALSE,https://github.com/theislab/scarches,268,NA,NA,NA theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,5,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,5,NA,NA,NA -theislab,scgen,theislab/scgen,209,10,15,47,FALSE,https://github.com/theislab/scgen,209,NA,NA,NA +theislab,scgen,theislab/scgen,208,10,15,47,FALSE,https://github.com/theislab/scgen,208,NA,NA,NA theislab,scgen-reproducibility,theislab/scgen-reproducibility,15,4,5,8,FALSE,https://github.com/theislab/scgen-reproducibility,15,NA,NA,NA theislab,scib,theislab/scib,226,17,26,44,FALSE,https://github.com/theislab/scib,NA,96556af27d94053a0e25f44383838e9e706683bc,move flake8 args to setup.cfg,[![](https://github.com/theislab/scib/workflows/Pre-commit/badge.svg)](https://github.com/theislab/scib/actions/runs/2276639868) -theislab,scib,theislab/scib,226,17,26,44,FALSE,https://github.com/theislab/scib,NA,ed3e2846414ca1e3dc07552c0eef1e68d82230d4,Bump version: 1.1.3 → 1.1.4,[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) [![](https://github.com/theislab/scib/workflows/Test/badge.svg)](https://github.com/theislab/scib/actions/runs/5647380554) +theislab,scib,theislab/scib,226,17,26,44,FALSE,https://github.com/theislab/scib,NA,ed3e2846414ca1e3dc07552c0eef1e68d82230d4,Bump version: 1.1.3 → 1.1.4,[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) theislab,scib-pipeline,theislab/scib-pipeline,37,7,14,24,FALSE,https://github.com/theislab/scib-pipeline,37,1180bcb35829d6d2984202268b4d1d11c511e20c,Merge branch 'fix/igraph_dependency' into rpy2_unpin,[![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) -theislab,scib-reproducibility,theislab/scib-reproducibility,39,6,2,10,FALSE,https://github.com/theislab/scib-reproducibility,39,NA,NA,NA -theislab,scvelo,theislab/scvelo,346,15,60,96,FALSE,https://github.com/theislab/scvelo,346,d89ca6aecbe93256fbcdd8a521fdee2b9f2a673a,Add metabolic labeling inference (#1103),[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673828) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673829) +theislab,scib-reproducibility,theislab/scib-reproducibility,40,6,2,11,FALSE,https://github.com/theislab/scib-reproducibility,40,NA,NA,NA +theislab,scvelo,theislab/scvelo,347,15,60,96,FALSE,https://github.com/theislab/scvelo,347,d89ca6aecbe93256fbcdd8a521fdee2b9f2a673a,Add metabolic labeling inference (#1103),[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673828) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673829) theislab,scvelo_notebooks,theislab/scvelo_notebooks,23,2,2,12,FALSE,https://github.com/theislab/scvelo_notebooks,23,NA,NA,NA theislab,sfaira,theislab/sfaira,129,8,177,13,FALSE,https://github.com/theislab/sfaira,129,96fcf8f55c9865728c8032bec35e8d9e836e7001,Merge branch 'dev' into data/d10_1101_2022_03_10_483747,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4859312807) theislab,sfaira,theislab/sfaira,129,8,177,13,FALSE,https://github.com/theislab/sfaira,129,c50240a74530e614ab7681bf9c63b04cb815b361,"Merge pull request #589 from theislab/release -Release 0.3.12",[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/5815331040) +Release 0.3.12",[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/5827346152) theislab,sfaira,theislab/sfaira,129,8,177,13,FALSE,https://github.com/theislab/sfaira,129,d1a9e6c4c7974abe685263206671a452f8e84c6f,fix miura organ annotation,[![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4734866287) theislab,sfaira-portal,theislab/sfaira-portal,0,4,2,0,FALSE,https://github.com/theislab/sfaira-portal,0,a06e268a61598ca1b7244d52f2e6246f48d6541d,fix typo,[![](https://github.com/theislab/sfaira-portal/workflows/Build-site/badge.svg)](https://github.com/theislab/sfaira-portal/actions/runs/1739478412) theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theislab/sfaira-site,0,NA,NA,NA theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,5,4,3,2,FALSE,https://github.com/theislab/sfaira_tutorials,5,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,448,16,43,77,FALSE,https://github.com/theislab/single-cell-best-practices,448,84bc8a19c73b8c5274aea1c3bc396f9cd211e214,Add disclaimer about scirpy data structure update (#228),[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599630) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599625) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599624) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599627) -theislab,single-cell-best-practices,theislab/single-cell-best-practices,448,16,43,77,FALSE,https://github.com/theislab/single-cell-best-practices,448,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,450,16,43,78,FALSE,https://github.com/theislab/single-cell-best-practices,450,84bc8a19c73b8c5274aea1c3bc396f9cd211e214,Add disclaimer about scirpy data structure update (#228),[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599630) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599625) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599624) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599627) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,450,16,43,78,FALSE,https://github.com/theislab/single-cell-best-practices,450,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) * scATAC_pp @@ -442,11 +442,11 @@ Signed-off-by: zethson Co-authored-by: xlancelottx Co-authored-by: zethson Co-authored-by: Anna Schaar ",[![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1114,30,21,414,FALSE,https://github.com/theislab/single-cell-tutorial,1114,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1117,30,21,415,FALSE,https://github.com/theislab/single-cell-tutorial,1117,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,4,4,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA theislab,spapros,theislab/spapros,18,3,23,5,FALSE,https://github.com/theislab/spapros,18,28b974a43a8745d7cb0518b55fd68ce63b044ced,"Merge pull request #266 from theislab/development -New version release",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940143488) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466680) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466678) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/5815875793) +New version release",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940143488) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466680) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466678) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/5827865952) theislab,spapros,theislab/spapros,18,3,23,5,FALSE,https://github.com/theislab/spapros,18,32aa90e29ff70afa4c001d47e80bcbd6e4d96d19,Bump version from 0.1.2 to 0.1.3,[![](https://github.com/theislab/spapros/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940112493) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,NA,NA,NA theislab,spapros-smk,theislab/spapros-smk,0,2,0,0,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA
theislab/single-cell-best-practices448450 16 437778 @@ -86,16 +86,16 @@

GitHub Dashboard

theislab/single-cell-best-practices448450 16 437778 c06ca9
theislab/scvelo346347 15 60 96 theislab/cellrank 250 81817 30 1287de theislab/cellrank 250 81817 30 17 26 44 - ed3e28
8 177 13 c50240
theislab/ehrapy 48 53532 635fc1284d33c
theislab/ehrapy 48 53532 684d33c + + + +a720b7
theislab/ehrapy 48 53532 6 b50f73 theislab/ehrapy 48 53532 6 f7843e - 28b974
1 12 0 -c18a8f +6eef34
theislab/bindome 2 0 041d81aa4642d
theislab/idtrack
theislab/single-cell-tutorial11141117 30 21414415
theislab/scarches
theislab/scgen209208 10 15 47 163 10 212829
theislab/kBET130131 9 8 23 116 9 92021
theislab/sc-pert
theislab/scib-reproducibility3940 6 21011
theislab/spatial_scog_workshop_2022 theislab/ehrapy-tutorials 3 232 1