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Investigate whether current KNN imputation default (FKNNI) works for all sparseness and AnnData objects #803

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Zethson opened this issue Oct 1, 2024 · 2 comments
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bug Something isn't working enhancement New feature or request

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@Zethson
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Zethson commented Oct 1, 2024

Description of feature

We ran into cases in the past where users suddenly reported that it didn't impute everything and we need to understand this.

  • Generate a loooot of different AnnData objects with different numbers of missing data etc. A LLM can easily do that for us.
  • Run KNN imputation with backend=fknni (default) on all of them -> check whether any of them break
@Zethson Zethson added bug Something isn't working enhancement New feature or request labels Oct 1, 2024
@eroell
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eroell commented Oct 1, 2024

We ran into cases in the past where users suddenly reported that it didn't impute everything

Does this relate to the same reportings as #734?

@Zethson
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Zethson commented Oct 2, 2024

Yes! Sorry this is a duplicate now :(

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