From b25e2d603728b052bfd8a1fd3096b977459f26fd Mon Sep 17 00:00:00 2001
From: Xiang Zhu <xiangzhu.nku@gmail.com>
Date: Mon, 16 Sep 2024 16:46:36 -0700
Subject: [PATCH] Build site.

---
 docs/news.html | 181 +++++++++++++++++++++++++++++++++++--------------
 1 file changed, 130 insertions(+), 51 deletions(-)

diff --git a/docs/news.html b/docs/news.html
index 491bc6d..0847ef5 100644
--- a/docs/news.html
+++ b/docs/news.html
@@ -355,15 +355,15 @@ <h4 class="author">Xiang Zhu</h4>
 <div class="panel panel-default">
 <div class="panel-heading">
 <p class="panel-title">
-<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRepositoryversionstrongahrefhttpsgithubcomstephenslabrsstree941a146ebc0cf0ff1dfa5bbd4f2662140b4dddaetargetblank941a146a">
+<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRepositoryversionstrongahrefhttpsgithubcomstephenslabrsstree390febb920abdf5d41a243218407651ca2c32be0targetblank390febba">
 <span class="glyphicon glyphicon-ok text-success"
 aria-hidden="true"></span> <strong>Repository version:</strong>
-<a href="https://github.com/stephenslab/rss/tree/941a146ebc0cf0ff1dfa5bbd4f2662140b4dddae" target="_blank">941a146</a>
+<a href="https://github.com/stephenslab/rss/tree/390febb920abdf5d41a243218407651ca2c32be0" target="_blank">390febb</a>
 </a>
 </p>
 </div>
 <div
-id="strongRepositoryversionstrongahrefhttpsgithubcomstephenslabrsstree941a146ebc0cf0ff1dfa5bbd4f2662140b4dddaetargetblank941a146a"
+id="strongRepositoryversionstrongahrefhttpsgithubcomstephenslabrsstree390febb920abdf5d41a243218407651ca2c32be0targetblank390febba"
 class="panel-collapse collapse">
 <div class="panel-body">
 <p>
@@ -373,7 +373,7 @@ <h4 class="author">Xiang Zhu</h4>
 </p>
 <p>
 The results in this page were generated with repository version
-<a href="https://github.com/stephenslab/rss/tree/941a146ebc0cf0ff1dfa5bbd4f2662140b4dddae" target="_blank">941a146</a>.
+<a href="https://github.com/stephenslab/rss/tree/390febb920abdf5d41a243218407651ca2c32be0" target="_blank">390febb</a>.
 See the <em>Past versions</em> tab to see a history of the changes made
 to the R Markdown and HTML files.
 </p>
@@ -436,6 +436,40 @@ <h4 class="author">Xiang Zhu</h4>
 <tbody>
 <tr>
 <td>
+Rmd
+</td>
+<td>
+<a href="https://github.com/stephenslab/rss/blob/390febb920abdf5d41a243218407651ca2c32be0/rmd/news.Rmd" target="_blank">390febb</a>
+</td>
+<td>
+Xiang Zhu
+</td>
+<td>
+2024-09-16
+</td>
+<td>
+add news since 2023 july
+</td>
+</tr>
+<tr>
+<td>
+html
+</td>
+<td>
+<a href="https://rawcdn.githack.com/stephenslab/rss/bd31fe5374feaf10cb85476222688f842e372535/docs/news.html" target="_blank">bd31fe5</a>
+</td>
+<td>
+Xiang Zhu
+</td>
+<td>
+2024-09-16
+</td>
+<td>
+Build site.
+</td>
+</tr>
+<tr>
+<td>
 html
 </td>
 <td>
@@ -1071,48 +1105,101 @@ <h4 class="author">Xiang Zhu</h4>
 </div>
 </div>
 <ul>
+<li><p>06/18/2024: Xiang presented various extensions of <a
+href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> for the
+integrative analysis of human disease genetics and enhancer biology at
+the 2024 ICSA Applied Statistics Symposium, Nashville, TN.</p></li>
+<li><p>06/12/2024: Xiang presented various extensions of <a
+href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> for the
+integrative analysis of human disease genetics and enhancer biology at
+the WNAR 2024, Fort Collins, CO.</p></li>
+<li><p>05/02/2024: Xiang received the Consortium of Rural States
+Multi-institutional Pilot Award as the Contact PI to incorporate
+innovative causal modeling techniques into the <a
+href="https://doi.org/10.1214/17-aoas1046">RSS likelihood</a> framework,
+with a special focus on enhancing the transferability of polygenic
+predictions for health and disease across diverse populations. <em>Penn
+State Today</em> published a <a
+href="https://www.psu.edu/news/clinical-and-translational-science-institute/story/consortium-rural-states-multi-institutional">press
+release</a> about this award.</p></li>
+<li><p>05/01/2024: Xiang presented various extensions of <a
+href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> for the
+integrative analysis of human disease genetics and enhancer biology at
+the STATGEN 2024, Pittsburgh, PA.</p></li>
+<li><p>02/12/2024: Xiang presented the <a
+href="https://doi.org/10.1214/17-aoas1046">RSS likelihood</a> and its
+extensions in various applications of human genetics at the Clinical and
+Translational Science Institute, Pennsylvania State University,
+University Park, PA.</p></li>
+<li><p>02/08/2024: Xiang presented various extensions of <a
+href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> for the
+integrative analysis of human disease genetics and enhancer biology at
+the Departments of Biostatistics and Genetics, University of North
+Carolina at Chapel Hill, Chapel Hill, NC.</p></li>
+<li><p>01/02/2024: The <a
+href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> extension
+to analyze <a
+href="https://doi.org/10.1186/s13059-023-03142-1">sequence-conserved
+enhancer-like elements</a> was published in <em>Genome
+Biology</em>.</p></li>
+<li><p>11/28/2023: Xiang received the <a
+href="https://rockethics.psu.edu/people/xiang-zhu/">Rock Ethics
+Institute Faculty Fellowship</a> as the PI to develop innovative AI for
+the effective and ethical prediction of genetic disease risk across
+diverse populations, based on the <a
+href="https://doi.org/10.1214/17-aoas1046">RSS likelihood</a>
+framework.</p></li>
+<li><p>11/14/2023: Xiang presented various extensions of <a
+href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> for the
+integrative analysis of human disease genetics and enhancer biology at
+the Division of Biostatistics and Health Data Science, University of
+Minnesota Twin Cities, Minneapolis, MN.</p></li>
+<li><p>11/09/2023: Xiang presented the <a
+href="https://doi.org/10.1214/17-aoas1046">RSS likelihood</a> and its
+extensions in various applications of human genetics at the Department
+of Statistics, University of Wisconsin–Madison, Madison, WI.</p></li>
 <li><p>07/31/2023: Xiang received the <a
 href="http://ctsi.psu.edu/">Penn State Clinical and Translational
-Science Institute</a> Bridges to Translation Pilot Grant as the Lead PI
+Science Institute</a> Bridges to Translation Pilot Award as the Lead PI
 to incorporate single-cell genomics and multi-ancestry GWAS into the <a
 href="https://doi.org/10.1214/17-aoas1046">RSS likelihood</a> framework,
 with a special focus on genetics of substance use in diverse human
 populations. <em>Penn State Today</em> published a <a
 href="https://www.psu.edu/news/clinical-and-translational-science-institute/story/penn-state-ctsi-announces-seven-bridges/">press
-release</a>.</p></li>
+release</a> about this award.</p></li>
 <li><p>05/12/2023: Xiang presented the <a
 href="https://doi.org/10.1214/17-aoas1046">RSS likelihood</a> and its
-various applications in human genetics at the Department of
-Biostatistics and Epidemiology, University of Massachusetts, Amherst,
+extensions in various applications of human genetics at the Department
+of Biostatistics and Epidemiology, University of Massachusetts, Amherst,
 MA.</p></li>
-<li><p>04/28/2023: Xiang presented the extension of <a
-href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> to analyze
-<a href="https://doi.org/10.1101/2022.08.19.504589">sequence-conserved
-enhancer-like elements</a> at the Program in Computational Biology,
-University of Chicago, Chicago, IL.</p></li>
+<li><p>04/28/2023: Xiang presented various extensions of <a
+href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> for the
+integrative analysis of human disease genetics and enhancer biology at
+the Program in Computational Biology, University of Chicago, Chicago,
+IL.</p></li>
 <li><p>04/26/2023: Xiang presented the <a
 href="https://doi.org/10.1214/17-aoas1046">RSS likelihood</a> and its
-various applications in human genetics at the Department of Mathematics,
-Statistics and Computer Science, University of Illinois at Chicago,
-Chicago, IL.</p></li>
+extensions in various applications of human genetics at the Department
+of Mathematics, Statistics and Computer Science, University of Illinois
+at Chicago, Chicago, IL.</p></li>
 <li><p>04/20/2023: Xiang presented the <a
 href="https://doi.org/10.1214/17-aoas1046">RSS likelihood</a> and its
-various applications in human genetics at the Department of Statistics,
-University of Florida, Gainesville, FL.</p></li>
-<li><p>04/14/2023: Xiang presented the extension of <a
-href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> to analyze
-<a href="https://doi.org/10.1101/2022.08.19.504589">sequence-conserved
-enhancer-like elements</a> at the Department of Biostatistics,
-University of Florida, Gainesville, FL.</p></li>
-<li><p>03/01/2023: Xiang presented the extension of <a
-href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> to analyze
-<a href="https://doi.org/10.1101/2022.08.19.504589">sequence-conserved
-enhancer-like elements</a> at the Center for Computational Biology and
-Bioinformatics, Pennsylvania State University, University Park,
-PA.</p></li>
+extensions in various applications of human genetics at the Department
+of Statistics, University of Florida, Gainesville, FL.</p></li>
+<li><p>04/14/2023: Xiang presented various extensions of <a
+href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> for the
+integrative analysis of human disease genetics and enhancer biology at
+the Department of Biostatistics, University of Florida, Gainesville,
+FL.</p></li>
+<li><p>03/01/2023: Xiang presented various extensions of <a
+href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> for the
+integrative analysis of human disease genetics and enhancer biology at
+the Center for Computational Biology and Bioinformatics, Pennsylvania
+State University, University Park, PA.</p></li>
 <li><p>02/03/2023: Xiang’s recent work on the genetics of cardiovascular
-health in diverse human populations and the ongoing effort to extend RSS
-methods to multi-ancestry GWAS were featured as the <a
+health in diverse human populations and the ongoing effort to extend the
+<a href="https://doi.org/10.1214/17-aoas1046">RSS likelihood</a>
+framework for multi-ancestry GWAS were featured as the <a
 href="https://www.psu.edu/news/eberly-college-science/story/improving-heart-health-diversifying-genetic-data/">Editor’s
 Picks in <em>Penn State Today</em></a>.</p></li>
 <li><p>12/18/2022: Xiang presented <a
@@ -1120,16 +1207,16 @@ <h4 class="author">Xiang Zhu</h4>
 extensions to analyze <a
 href="https://doi.org/10.1073/pnas.2115601119">H3K27ac HiChIP
 networks</a> and <a
-href="https://doi.org/10.1101/2022.08.19.504589">sequence-conserved
+href="https://doi.org/10.1186/s13059-023-03142-1">sequence-conserved
 enhancer-like elements</a> at the 2022 CMStatistics, London,
 UK.</p></li>
 <li><p>09/14/2022: Xiang presented the <a
 href="https://doi.org/10.1214/17-aoas1046">RSS likelihood</a> and its
-various applications in human genetics at the Department of Statistics,
-University of Nebraska-Lincoln, Lincoln, NE.</p></li>
+extensions in various applications of human genetics at the Department
+of Statistics, University of Nebraska-Lincoln, Lincoln, NE.</p></li>
 <li><p>08/19/2022: Xiang extended <a
 href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> to analyze
-<a href="https://doi.org/10.1101/2022.08.19.504589">sequence-conserved
+<a href="https://doi.org/10.1186/s13059-023-03142-1">sequence-conserved
 enhancer-like elements</a>, which was posted on
 <em>bioRxiv</em>.</p></li>
 <li><p>08/04/2022: Xiang applied <a
@@ -1154,8 +1241,13 @@ <h4 class="author">Xiang Zhu</h4>
 likelihood</a> framework, with a special focus on genetics of tobacco
 use in diverse human populations.</p></li>
 <li><p>05/02/2022: Xiang presented <a
-href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> at the
-Department of Statistics, University of Missouri, Columbia, MO.</p></li>
+href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> and its
+extensions to analyze <a
+href="https://doi.org/10.1073/pnas.2115601119">H3K27ac HiChIP
+networks</a> and <a
+href="https://doi.org/10.1186/s13059-023-03142-1">sequence-conserved
+enhancer-like elements</a> at the Department of Statistics, University
+of Missouri, Columbia, MO.</p></li>
 <li><p>03/30/2022: Xiang received the <a
 href="https://www.icds.psu.edu/">Penn State Institute for Computational
 and Data Sciences</a> Seed Grant as the Lead PI to incorporate
@@ -1164,7 +1256,7 @@ <h4 class="author">Xiang Zhu</h4>
 with a special focus on genetics of cardiometabolic diseases in diverse
 human populations. <em>Penn State Today</em> published a <a
 href="https://www.psu.edu/news/institute-computational-and-data-sciences/story/seed-grants-fund-projects-tackle-huge-scientific/">press
-release</a>.</p></li>
+release</a> about this grant.</p></li>
 <li><p>01/04/2022: Xiang extended <a
 href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> to analyze
 regulatory networks derived from H3K27ac HiChIP experiments. This <a
@@ -1188,9 +1280,6 @@ <h4 class="author">Xiang Zhu</h4>
 <li><p>04/14/2021: Xiang presented <a
 href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> at the
 2021 Virtual CSHL Probabilistic Modeling in Genomics Meeting.</p></li>
-<li><p>03/03/2021: <a
-href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> was
-accepted by <em>Nature Communications</em>.</p></li>
 <li><p>11/04/2020: Xiang presented <a
 href="https://doi.org/10.1038/s41467-021-22588-0">RSS-NET</a> at the
 2020 Virtual CSHL Biological Data Science Meeting.</p></li>
@@ -1230,13 +1319,6 @@ <h4 class="author">Xiang Zhu</h4>
 <li><p>10/19/2018: <a
 href="https://doi.org/10.1038/s41467-018-06805-x">RSS-E</a> was
 published in <em>Nature Communications</em>.</p></li>
-<li><p>10/09/2018: Xiang presented <a
-href="https://doi.org/10.1038/s41467-018-06805-x">RSS-E</a> at the
-MVP/ERIC/Assimes Group Meeting, Stanford University, Stanford,
-CA.</p></li>
-<li><p>09/29/2018: <a
-href="https://doi.org/10.1038/s41467-018-06805-x">RSS-E</a> was accepted
-by <em>Nature Communications</em>.</p></li>
 <li><p>10/19/2017: Xiang presented <a
 href="https://doi.org/10.1038/s41467-018-06805-x">RSS-E</a> at the 2017
 ASHG, Orlando, FL.</p></li>
@@ -1264,9 +1346,6 @@ <h4 class="author">Xiang Zhu</h4>
 Bytes 2017, University of Chicago, Chicago, IL. This work won the <a
 href="https://mindbytes.uchicago.edu/2017/callforposters.php#tab8">Mind
 Bytes Award for Big-Data Research</a>.</p></li>
-<li><p>04/04/2017: <a href="https://doi.org/10.1214/17-aoas1046">RSS
-likelihood</a> was accepted by <em>Annals of Applied
-Statistics</em>.</p></li>
 <li><p>02/22/2017: Xiang presented <a
 href="https://doi.org/10.1214/17-aoas1046">RSS likelihood</a> at the
 Department of Statistics, Stanford University, Stanford, CA.</p></li>