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can we document what this does by referencing @zouyuxin thesis when this is finalized?
presumably it is using the ad hoc em algorithm there?
does it also return a complete mash fit? ie do you have to run mash on this afterwards?
We should add it to the vignette on dealing with correlations.
I also note the phrasing "under the null" is confusing because it suggests we are assuming the null,
but actually it is the "residual" correlation (ie the correlation after removing effects).
I think the name estimate_null_correlation is fine, but let's clarify the description
The text was updated successfully, but these errors were encountered:
can we document what this does by referencing @zouyuxin thesis when this is finalized?
presumably it is using the ad hoc em algorithm there?
does it also return a complete mash fit? ie do you have to run mash on this afterwards?
We should add it to the vignette on dealing with correlations.
I also note the phrasing "under the null" is confusing because it suggests we are assuming the null,
but actually it is the "residual" correlation (ie the correlation after removing effects).
I think the name
estimate_null_correlation
is fine, but let's clarify the descriptionThe text was updated successfully, but these errors were encountered: