From b7e015f03aab4ace8024bfebf98b7d806427debd Mon Sep 17 00:00:00 2001
From: Sergey O <krypton@uw.edu>
Date: Tue, 15 Oct 2024 13:47:15 -0400
Subject: [PATCH] Fixing Conda

---
 AlphaFold2.ipynb | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

diff --git a/AlphaFold2.ipynb b/AlphaFold2.ipynb
index 7d363414..4cb18d55 100644
--- a/AlphaFold2.ipynb
+++ b/AlphaFold2.ipynb
@@ -128,8 +128,7 @@
         "\n",
         "print(\"jobname\",jobname)\n",
         "print(\"sequence\",query_sequence)\n",
-        "print(\"length\",len(query_sequence.replace(\":\",\"\")))\n",
-        "\n"
+        "print(\"length\",len(query_sequence.replace(\":\",\"\")))"
       ],
       "execution_count": null,
       "outputs": []
@@ -157,8 +156,8 @@
         "if USE_AMBER or USE_TEMPLATES:\n",
         "  if not os.path.isfile(\"CONDA_READY\"):\n",
         "    print(\"installing conda...\")\n",
-        "    os.system(\"wget -qnc https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh\")\n",
-        "    os.system(\"bash Mambaforge-Linux-x86_64.sh -bfp /usr/local\")\n",
+        "    os.system(\"wget -qnc https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh\")\n",
+        "    os.system(\"bash Miniforge3-Linux-x86_64.sh -bfp /usr/local\")\n",
         "    os.system(\"mamba config --set auto_update_conda false\")\n",
         "    os.system(\"touch CONDA_READY\")\n",
         "\n",
@@ -501,7 +500,7 @@
         "  <img src=\"{cov}\" class=\"half\" />\n",
         "  <img src=\"{plddt}\" class=\"half\" />\n",
         "</div>\n",
-        "\"\"\"))\n"
+        "\"\"\"))"
       ],
       "execution_count": null,
       "outputs": []