From f10045ef01cf997ab7b031ed7cd4c2de062a85d2 Mon Sep 17 00:00:00 2001
From: "snakedeploy-bot[bot]"
 <115615832+snakedeploy-bot[bot]@users.noreply.github.com>
Date: Wed, 23 Oct 2024 14:11:29 +0000
Subject: [PATCH] perf: autobump bio/vep/cache (#3359)

Automatic bump of bio/vep/cache.

---------

Co-authored-by: snakedeploy-bot[bot] <115615832+snakedeploy-bot[bot]@users.noreply.github.com>
---
 bio/vep/cache/environment.linux-64.pin.txt | 139 +++++++++++----------
 bio/vep/cache/environment.yaml             |   2 +-
 2 files changed, 73 insertions(+), 68 deletions(-)

diff --git a/bio/vep/cache/environment.linux-64.pin.txt b/bio/vep/cache/environment.linux-64.pin.txt
index dd59bc10272..01fd127131a 100644
--- a/bio/vep/cache/environment.linux-64.pin.txt
+++ b/bio/vep/cache/environment.linux-64.pin.txt
@@ -3,96 +3,101 @@
 # platform: linux-64
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
-https://conda.anaconda.org/bioconda/linux-64/blast-legacy-2.2.26-h9ee0642_3.tar.bz2#b7fe67ef984501e8089a142f1f58ab2f
-https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.6.2-hbcca054_0.conda#847c3c2905cc467cea52c24f9cfa8080
+https://conda.anaconda.org/bioconda/linux-64/blast-legacy-2.2.26-h9ee0642_4.tar.bz2#d35a85be775b5181e48cc3a5510cd6f3
+https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.8.30-hbcca054_0.conda#c27d1c142233b5bc9ca570c6e2e0c244
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-https://conda.anaconda.org/conda-forge/noarch/font-ttf-ubuntu-0.83-h77eed37_2.conda#cbbe59391138ea5ad3658c76912e147f
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+https://conda.anaconda.org/conda-forge/noarch/font-ttf-ubuntu-0.83-h77eed37_3.conda#49023d73832ef61042f6a237cb2687e7
+https://conda.anaconda.org/conda-forge/noarch/kernel-headers_linux-64-3.10.0-he073ed8_17.conda#285931bd28b3b8f176d46dd9fd627a09
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 https://conda.anaconda.org/conda-forge/linux-64/perl-test-differences-0.71-pl5321ha770c72_0.conda#f8d63311ef6aac0220fc3d490ccff6bd
+https://conda.anaconda.org/bioconda/noarch/perl-test-fatal-0.016-pl5321hdfd78af_0.tar.bz2#c67cdcdcfd2d0ae252c9d17f40da798d
 https://conda.anaconda.org/bioconda/noarch/perl-time-local-1.35-pl5321hdfd78af_0.tar.bz2#e813d43b775e17589b5dd9cd99b3e8b6
 https://conda.anaconda.org/conda-forge/noarch/py4j-0.10.9.7-pyhd8ed1ab_0.tar.bz2#0f01a52cf858aef86632a8ab08011c0c
 https://conda.anaconda.org/conda-forge/noarch/pycparser-2.21-pyhd8ed1ab_0.tar.bz2#076becd9e05608f8dc72757d5f3a91ff
-https://conda.anaconda.org/conda-forge/noarch/pyparsing-3.1.2-pyhd8ed1ab_0.conda#b9a4dacf97241704529131a0dfc0494f
-https://conda.anaconda.org/conda-forge/noarch/pytz-2024.1-pyhd8ed1ab_0.conda#3eeeeb9e4827ace8c0c1419c85d590ad
+https://conda.anaconda.org/conda-forge/noarch/pyparsing-3.1.4-pyhd8ed1ab_0.conda#4d91352a50949d049cf9714c8563d433
+https://conda.anaconda.org/conda-forge/noarch/pytz-2024.2-pyhd8ed1ab_0.conda#260009d03c9d5c0f111904d851f053dc
 https://conda.anaconda.org/conda-forge/linux-64/pyyaml-6.0-py37h540881e_4.tar.bz2#f231119f9790da6da6bd93b250b7e42e
 https://conda.anaconda.org/conda-forge/linux-64/setuptools-59.8.0-py37h89c1867_1.tar.bz2#136867136f5a231f42cb5ea0e0b5a18b
 https://conda.anaconda.org/conda-forge/noarch/six-1.16.0-pyh6c4a22f_0.tar.bz2#e5f25f8dbc060e9a8d912e432202afc2
 https://conda.anaconda.org/conda-forge/noarch/sniffio-1.3.1-pyhd8ed1ab_0.conda#490730480d76cf9c8f8f2849719c6e2b
-https://conda.anaconda.org/conda-forge/noarch/stdlib-list-0.10.0-pyhd8ed1ab_0.conda#8249e25446e405614e4b9421456a14ca
+https://conda.anaconda.org/conda-forge/noarch/stdlib-list-0.11.0-pyhd8ed1ab_0.conda#0f3ae9b96c6072d680c505425515fad1
 https://conda.anaconda.org/conda-forge/linux-64/tbb-2021.9.0-hf52228f_0.conda#f495e42d3d2020b025705625edf35490
 https://conda.anaconda.org/conda-forge/noarch/threadpoolctl-3.1.0-pyh8a188c0_0.tar.bz2#a2995ee828f65687ac5b1e71a2ab1e0c
 https://conda.anaconda.org/conda-forge/linux-64/tornado-6.2-py37h540881e_0.tar.bz2#2f0863ba6b29d1d2872b064dd697a492
 https://conda.anaconda.org/conda-forge/noarch/typing_extensions-4.7.1-pyha770c72_0.conda#c39d6a09fe819de4951c2642629d9115
 https://conda.anaconda.org/bioconda/linux-64/viennarna-2.5.1-py37pl5321h09c1ff4_1.tar.bz2#37a02ec9cfffe5c888159db02510915a
 https://conda.anaconda.org/conda-forge/noarch/wheel-0.42.0-pyhd8ed1ab_0.conda#1cdea58981c5cbc17b51973bcaddcea7
-https://conda.anaconda.org/conda-forge/linux-64/xorg-libxi-1.7.10-h7f98852_0.tar.bz2#e77615e5141cad5a2acaa043d1cf0ca5
+https://conda.anaconda.org/conda-forge/linux-64/xorg-libxtst-1.2.3-h7f98852_1002.tar.bz2#a220b1a513e19d5cb56c1311d44f12e6
 https://conda.anaconda.org/conda-forge/noarch/zipp-3.15.0-pyhd8ed1ab_0.conda#13018819ca8f5b7cc675a8faf1f5fedf
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 https://conda.anaconda.org/conda-forge/noarch/cached-property-1.5.2-hd8ed1ab_1.tar.bz2#9b347a7ec10940d3f7941ff6c460b551
@@ -264,19 +270,18 @@ https://conda.anaconda.org/bioconda/noarch/perl-archive-tar-2.40-pl5321hdfd78af_
 https://conda.anaconda.org/bioconda/noarch/perl-bioperl-run-1.007003-pl5321hdfd78af_0.tar.bz2#5b7b092efda407c9af1981426d83f3f5
 https://conda.anaconda.org/conda-forge/noarch/perl-business-isbn-3.007-pl5321hd8ed1ab_0.tar.bz2#a7a3d7614e1a73b8d9c20030651d6006
 https://conda.anaconda.org/bioconda/noarch/perl-http-date-6.06-pl5321hdfd78af_0.tar.bz2#dbf1658443c214ea04fce36312d7efe3
-https://conda.anaconda.org/bioconda/noarch/perl-json-4.10-pl5321hdfd78af_0.tar.bz2#05467eeb1e57206d8dddf31c3128cd00
+https://conda.anaconda.org/bioconda/noarch/perl-json-4.10-pl5321hdfd78af_1.tar.bz2#c6c43c11e14d90b836f42c611e106ea9
 https://conda.anaconda.org/bioconda/noarch/perl-test-most-0.38-pl5321hdfd78af_0.tar.bz2#af484f1f44bf33bb0a6ab33e109ab8cb
 https://conda.anaconda.org/conda-forge/linux-64/pillow-8.2.0-py37h4600e1f_1.tar.bz2#8998270d7ebbb22261ab440176d3a5cf
 https://conda.anaconda.org/conda-forge/noarch/pip-24.0-pyhd8ed1ab_0.conda#f586ac1e56c8638b64f9c8122a7b8a67
 https://conda.anaconda.org/conda-forge/noarch/python-dateutil-2.9.0-pyhd8ed1ab_0.conda#2cf4264fffb9e6eff6031c5b6884d61c
 https://conda.anaconda.org/conda-forge/noarch/sinfo-0.3.1-py_0.tar.bz2#7647b886e6454e1455b5a5c2c2e68ed3
-https://conda.anaconda.org/conda-forge/noarch/tqdm-4.66.4-pyhd8ed1ab_0.conda#e74cd796e70a4261f86699ee0a3a7a24
+https://conda.anaconda.org/conda-forge/noarch/tqdm-4.66.5-pyhd8ed1ab_0.conda#c6e94fc2b2ec71ea33fe7c7da259acb4
 https://conda.anaconda.org/conda-forge/noarch/typing-extensions-4.7.1-hd8ed1ab_0.conda#f96688577f1faa58096d06a45136afa2
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-https://conda.anaconda.org/conda-forge/linux-64/xorg-libxtst-1.2.3-h7f98852_1002.tar.bz2#a220b1a513e19d5cb56c1311d44f12e6
 https://conda.anaconda.org/conda-forge/linux-64/cryptography-38.0.2-py37h5994e8b_1.tar.bz2#5a8bb0074be9d20d456957f92b72beed
-https://conda.anaconda.org/conda-forge/noarch/dunamai-1.21.1-pyhd8ed1ab_0.conda#1786b204f602df5c04ef8cd9330379fe
-https://conda.anaconda.org/bioconda/linux-64/entrez-direct-22.1-he881be0_0.tar.bz2#57b4957374cfeb937f02aa75670b02fa
+https://conda.anaconda.org/conda-forge/noarch/dunamai-1.22.0-pyhd8ed1ab_0.conda#8946f56fdbe10c6d8a50435805c4ffd2
+https://conda.anaconda.org/bioconda/linux-64/entrez-direct-22.4-he881be0_0.tar.bz2#0994f567f11543b7aea1afce884c2ce6
 https://conda.anaconda.org/conda-forge/linux-64/h5py-3.7.0-nompi_py37hf1ce037_101.tar.bz2#aee979a3523b8755f8c529691a7aff11
 https://conda.anaconda.org/conda-forge/noarch/httpcore-0.17.3-pyhd8ed1ab_0.conda#1d87ab91a891b4f6ea8ca6e13496e2b1
 https://conda.anaconda.org/conda-forge/noarch/importlib_metadata-4.11.4-hd8ed1ab_0.tar.bz2#9a1925fdb91c81437b8012e48ede6851
@@ -294,7 +299,7 @@ https://conda.anaconda.org/bioconda/noarch/perl-file-listing-6.16-pl5321hdfd78af
 https://conda.anaconda.org/conda-forge/linux-64/perl-uri-5.17-pl5321ha770c72_0.conda#847c007d5f4a59b356a9cd577010b89c
 https://conda.anaconda.org/conda-forge/linux-64/scipy-1.7.3-py37hf2a6cf1_0.tar.bz2#129c613e1d0f09d9fd0473a0da6161a9
 https://conda.anaconda.org/conda-forge/noarch/anndata-0.8.0-pyhd8ed1ab_1.tar.bz2#745bac401cb4aadf92de608f26c7d95f
-https://conda.anaconda.org/bioconda/linux-64/blast-2.15.0-pl5321h6f7f691_1.tar.bz2#f7e6a87317b5d00469d39a2d1ef2698f
+https://conda.anaconda.org/bioconda/linux-64/blast-2.16.0-hc155240_2.tar.bz2#7870230d4cc0a7647eb90b6e2ebd977f
 https://conda.anaconda.org/conda-forge/noarch/dnspython-2.4.2-pyhd8ed1ab_0.conda#de3aca457e8e70495a775d33510b50eb
 https://conda.anaconda.org/conda-forge/noarch/get_version-3.5.4-pyhd8ed1ab_0.tar.bz2#425735f0374f78bf3b5f8ea1e825d700
 https://conda.anaconda.org/conda-forge/linux-64/matplotlib-base-3.3.2-py37h4f6019d_1.tar.bz2#b9d3554ef8b02ab7332e2924db5f1db6
@@ -330,4 +335,4 @@ https://conda.anaconda.org/bioconda/linux-64/t-coffee-13.46.0.919e8c6b-h4cf071a_
 https://conda.anaconda.org/bioconda/noarch/perl-bio-tools-run-alignment-tcoffee-1.7.4-pl5321hdfd78af_5.tar.bz2#932416c9ba6a9af43609e04ec5952574
 https://conda.anaconda.org/bioconda/noarch/perl-bioperl-1.7.8-hdfd78af_1.tar.bz2#a693939710e572d0f85f6058b534e319
 https://conda.anaconda.org/bioconda/linux-64/perl-bio-db-hts-3.01-pl5321he4a0461_9.tar.bz2#3b9d82fded871252fb6be771eb78d69a
-https://conda.anaconda.org/bioconda/noarch/ensembl-vep-112.0-pl5321h2a3209d_0.tar.bz2#483c04201882a9ba1b18ddb505ea284b
+https://conda.anaconda.org/bioconda/noarch/ensembl-vep-113.0-pl5321h2a3209d_0.tar.bz2#b656f1321c5f365bf40a14c8c4b39659
diff --git a/bio/vep/cache/environment.yaml b/bio/vep/cache/environment.yaml
index e3f3005aad1..20c208fb4e0 100644
--- a/bio/vep/cache/environment.yaml
+++ b/bio/vep/cache/environment.yaml
@@ -3,4 +3,4 @@ channels:
   - bioconda
   - nodefaults
 dependencies:
-  - ensembl-vep =112.0
+  - ensembl-vep =113.0