diff --git a/bio/picard/mergevcfs/test/Snakefile b/bio/picard/mergevcfs/test/Snakefile index 6ee584cdad..c04291dd5a 100644 --- a/bio/picard/mergevcfs/test/Snakefile +++ b/bio/picard/mergevcfs/test/Snakefile @@ -1,6 +1,6 @@ rule merge_vcfs: input: - ["snvs.chr1.vcf", "snvs.chr2.vcf"] + vcfs=["snvs.chr1.vcf", "snvs.chr2.vcf"] output: "snvs.vcf" log: diff --git a/bio/picard/mergevcfs/wrapper.py b/bio/picard/mergevcfs/wrapper.py index 59b69c83d5..4443dd53f5 100644 --- a/bio/picard/mergevcfs/wrapper.py +++ b/bio/picard/mergevcfs/wrapper.py @@ -9,7 +9,7 @@ from snakemake.shell import shell -inputs = " ".join("INPUT={}".format(f) for f in snakemake.input) +inputs = " ".join("INPUT={}".format(f) for f in snakemake.input.vcfs) log = snakemake.log_fmt_shell(stdout=False, stderr=True) extra = snakemake.params.get("extra", "")