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Centerline labels not the same dimensiosn as other labels or T1w #13

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mathieuboudreau opened this issue Nov 1, 2024 · 0 comments
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@mathieuboudreau
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First noticed by Sebastien, who uses them for his spine mesured B0 vs sim B0 project.

eg,

Last login: Wed Oct 30 23:45:22 on ttys017
/Users/mathieuboudreau/.zshrc:source:6: no such file or directory: /Applications/freesurfer/7.2.0/SetUpFreeSurfer.sh
(base) mathieuboudreau@Mathieus-MacBook-Pro whole-spine % fslinfo /Users/mathieuboudreau/neuropoly/projects/shimming-toolbox/data/data.neuro.polymtl.ca/whole-spine/sub-amuAL/anat/sub-amuAL_T1w.nii.gz
filename	/Users/mathieuboudreau/neuropoly/projects/shimming-toolbox/data/data.neuro.polymtl.ca/whole-spine/sub-amuAL/anat/sub-amuAL_T1w.nii.gz
data_type	FLOAT64
dim1		173
dim2		270
dim3		701
dim4		1
datatype	64
pixdim1		0.999997
pixdim2		1.000000
pixdim3		1.000000
pixdim4		1.000000
cal_max		0.000000
cal_min		0.000000
file_type	NIFTI-1+
(base) mathieuboudreau@Mathieus-MacBook-Pro whole-spine % fslinfo /Users/mathieuboudreau/neuropoly/projects/shimming-toolbox/data/data.neuro.polymtl.ca/whole-spine/derivatives/labels/sub-amuAL/anat/sub-amuAL_T1w_label-brain_dseg.nii.gz
filename	/Users/mathieuboudreau/neuropoly/projects/shimming-toolbox/data/data.neuro.polymtl.ca/whole-spine/derivatives/labels/sub-amuAL/anat/sub-amuAL_T1w_label-brain_dseg.nii.gz
data_type	INT32
dim1		173
dim2		270
dim3		701
dim4		1
datatype	8
pixdim1		0.999997
pixdim2		1.000000
pixdim3		1.000000
pixdim4		0.000000
cal_max		0.000000
cal_min		0.000000
file_type	NIFTI-1+
(base) mathieuboudreau@Mathieus-MacBook-Pro whole-spine % fslinfo /Users/mathieuboudreau/neuropoly/projects/shimming-toolbox/data/data.neuro.polymtl.ca/whole-spine/derivatives/labels/sub-amuAL/anat/sub-amuAL_T1w_centerline.nii.gz
filename	/Users/mathieuboudreau/neuropoly/projects/shimming-toolbox/data/data.neuro.polymtl.ca/whole-spine/derivatives/labels/sub-amuAL/anat/sub-amuAL_T1w_centerline.nii.gz
data_type	UINT8
dim1		173
dim2		243
dim3		523
dim4		1
datatype	2
pixdim1		1.000005
pixdim2		1.000000
pixdim3		1.000000
pixdim4		1.000000
cal_max		0.000000
cal_min		0.000000
file_type	NIFTI-1+
(base) mathieuboudreau@Mathieus-MacBook-Pro whole-spine % 

The BIDS sidecar for the centerline label is empty, so I don't know who made these labels or how they were made.

Screenshot 2024-10-31 at 10 18 18 PM
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