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Biopython 1.78 not compatible because of Alphabet missing #307
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Did this work for you? If possible, could you provide a few lines on how to downgrade biopython? |
Sorry for the late response! In case you are still stuck: |
It's still not fixed. @martinghunt . Just install an old biopython before installing ariba.
Maybe you can just specify the maximum biopython version in pip. |
Using ARIBA for gene detection, I tried to download the ncbi database with the following line
ariba getref ncbi out.ncbi
As reported there it seems to be because of Biopython 1.78.
I will try downgrading to Biopython 1.77 to see if it solves the issue.
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