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MAINT: Implement a validation method for the OrthologFileFmt #321

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Sann5 opened this issue Apr 18, 2024 · 2 comments
Open

MAINT: Implement a validation method for the OrthologFileFmt #321

Sann5 opened this issue Apr 18, 2024 · 2 comments

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@Sann5
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Sann5 commented Apr 18, 2024

Improvement Description
Implement a validation method for the OrthologFileFmt format (defined in the genome_data module). This format defines a FileCollection in the SeedOrthologDirFmt format which is associated with the SampleData[BLAST6] semantic type. This semantic type is used in the eggnog-diamond-search action from q2-moshpit.

Current Behavior
No validation method implemented, i.e. no validation is taking place.

Proposed Behavior
Validate these files which have a well-defined format (BLAST6).

@lizgehret
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Hey @Sann5! We'd be happy to get this into the 2024.10 release - is this something that your team is planning on working on, or would you like us to implement?

@Sann5
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Sann5 commented Jun 7, 2024

Hey @lizgehret. It would be great if you could implement this 👍🏼. We were not planning on doing it anytime soon.

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