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Hi , I am interested to use some specific databases in qiime2 from NCBI- https://ftp.ncbi.nlm.nih.gov/blast/db/ I am familiar with this post https://forum.qiime2.org/t/using-rescript-to-compile-sequence-databases-and-taxonomy-classifiers-from-ncbi-genbank/15947 But , this post doesnt not cover if we have to download some new databases and how to handle taxonomy from NCBI. For example in the link below, NCBI- https://ftp.ncbi.nlm.nih.gov/blast/db/, there are 4 experimental taxonomic nt databases released , eukaryotes, prokaryotes, viruses and others. The tar.gz files are in found in the link. How to use them for qiime2 many thanks Jibran
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Hi @jibrantahir for QIIME 2 usage questions and technical support please post your question in the QIIME 2 forum. Thank you!
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Hi , I am interested to use some specific databases in qiime2 from NCBI- https://ftp.ncbi.nlm.nih.gov/blast/db/
I am familiar with this post https://forum.qiime2.org/t/using-rescript-to-compile-sequence-databases-and-taxonomy-classifiers-from-ncbi-genbank/15947
But , this post doesnt not cover if we have to download some new databases and how to handle taxonomy from NCBI. For example in the link below, NCBI- https://ftp.ncbi.nlm.nih.gov/blast/db/, there are 4 experimental taxonomic nt databases released , eukaryotes, prokaryotes, viruses and others. The tar.gz files are in found in the link. How to use them for qiime2
many thanks
Jibran
The text was updated successfully, but these errors were encountered: