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Using new NCBI 4 experimental taxonomic nt databases for qiime2 classifer #200

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jibrantahir opened this issue Apr 28, 2024 · 1 comment

jibrantahir commented Apr 28, 2024

Hi , I am interested to use some specific databases in qiime2 from NCBI- https://ftp.ncbi.nlm.nih.gov/blast/db/
I am familiar with this post https://forum.qiime2.org/t/using-rescript-to-compile-sequence-databases-and-taxonomy-classifiers-from-ncbi-genbank/15947
But , this post doesnt not cover if we have to download some new databases and how to handle taxonomy from NCBI. For example in the link below, NCBI- https://ftp.ncbi.nlm.nih.gov/blast/db/, there are 4 experimental taxonomic nt databases released , eukaryotes, prokaryotes, viruses and others. The tar.gz files are in found in the link. How to use them for qiime2
many thanks
Jibran

Member

nbokulich commented May 1, 2024

Hi @jibrantahir for QIIME 2 usage questions and technical support please post your question in the QIIME 2 forum. Thank you!

nbokulich closed this as completed

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