_config.yml

# Welcome to Jekyll!
#
# This config file is meant for settings that affect your whole blog, values
# which you are expected to set up once and rarely edit after that. If you find
# yourself editing this file very often, consider using Jekyll's data files
# feature for the data you need to update frequently.
#
# For technical reasons, this file is *NOT* reloaded automatically when you use
# 'bundle exec jekyll serve'. If you change this file, please restart the server process.
#
# If you need help with YAML syntax, here are some quick references for you: 
# https://learn-the-web.algonquindesign.ca/topics/markdown-yaml-cheat-sheet/#yaml
# https://learnxinyminutes.com/docs/yaml/
#
# Site settings
# These are used to personalize your new site. If you look in the HTML files,
# you will see them accessed via {{ site.title }}, {{ site.email }}, and so on.
# You can create any custom variable you would like, and they will be accessible
# in the templates via {{ site.myvariable }}.

title: Print Your Brain
email: your-email@example.com
description: >- # this means to ignore newlines until "baseurl:"
  We develop an Open Source data processing pipeline 
  by which T1 fMRI scans of brains could be 3D printed.
baseurl: "" # the subpath of your site, e.g. /blog
url: "http://printyourbrain.github.io" # the base hostname & protocol for your site, e.g. http://example.com
twitter_username: 
github_username:  

# Build settings
# theme: minima
# removed beautiful-jekyll-theme as it is now a regular theme
# theme: beautiful-jekyll-theme
plugins:
  - jekyll-feed

# Exclude from processing.
# The following items will not be processed, by default.
# Any item listed under the `exclude:` key here will be automatically added to
# the internal "default list".
#
# Excluded items can be processed by explicitly listing the directories or
# their entries' file path in the `include:` list.
#
# exclude:
#   - .sass-cache/
#   - .jekyll-cache/
#   - gemfiles/
#   - Gemfile
#   - Gemfile.lock
#   - node_modules/
#   - vendor/bundle/
#   - vendor/cache/
#   - vendor/gems/
#   - vendor/ruby/

# custom pages
collections:
  wiki: 
    output: true
    # permalink: /wiki/:path


# From:
# https://github.com/daattali/beautiful-jekyll/blob/master/_config.yml

# --- List of links in the navigation bar --- #

navbar-links:
  About: "about"
  WIKI: "https://github.com/printyourbrain/PrintYourBrain/wiki"
  Blog: "blog"
  Team: "team"

# --- Logo --- #

# Image to show in the navigation bar - works best with a square image
# Remove this parameter if you don't want an image in the navbar
avatar: "assets/img/pyb-logo_crop.png"

# By default, the image is cut into a circle. You can disable this behaviour by setting 'round-avatar: false'
round-avatar: true


# If you want to have an image logo in the top-left corner instead of having the title of the website,
# then specify the following parameter
#title-img: /path/to/image


# --- Footer social media links --- #

# Select the social network links that you want to show in the footer.
# Uncomment the links you want to show and add your information to each one.
social-network-links:
  email: "titoschmi@zedat.fu-berlin.de"
  # rss: true  # remove this line if you don't want to show an RSS link at the bottom
  # facebook: deanattali
  github: printyourbrain
  # twitter: daattali
  # patreon: DeanAttali
  # youtube: c/daattali
#  medium: yourname
#  reddit: yourname
#  linkedin: daattali
#  xing: yourname
#  stackoverflow: "3943160/daattali"
#  snapchat: deanat78
#  instagram: deanat78
#  spotify: yourname
#  telephone: +14159998888
#  steam: deanat78
#  twitch: yourname
#  yelp: yourname
#  telegram: yourname
#  calendly: yourname
#  mastodon: instance.url/@username
#  ORCID: your ORCID ID
#  google-scholar: your google scholar
#  discord: invite/invite_code or users/userid 

# If you want your website to generate an RSS feed, provide a description
# The URL for the feed will be https://<your_website>/feed.xml
# rss-description: This website is a virtual proof that I'm awesome

# --- General options --- #

# Select which social network share links to show in posts
# share-links-active:
#   twitter: true
#   facebook: true
#   linkedin: true
#   vk: false

# How to display the link to your website in the footer
# Remove this if you don't want a link in the footer
# url-pretty: "MyWebsite.com"

# Excerpt word length - Truncate the excerpt of each post on the feed page to the specified number of words
excerpt_length: 50

# Whether or not to show an excerpt for every blog post in the feed page
feed_show_excerpt: true

# Whether or not to show a list of tags below each post preview in the feed page
feed_show_tags: true

# Add a search button to the navbar
post_search: true

# The keywords to associate with your website, for SEO purposes
#keywords: "my,list,of,keywords"

# --- Colours / background image --- #

# Personalize the colours in your website. Colour values can be any valid CSS colour

navbar-col: "#EAEAEA"
navbar-text-col: "#404040"
navbar-border-col: "#DDDDDD"
page-col: "#FFFFFF"
text-col: "#404040"
link-col: "#008AFF"
hover-col: "#0085A1"
footer-col: "#EAEAEA"
footer-text-col: "#777777"
footer-link-col: "#404040"
footer-hover-col: "#0085A1"

# Alternatively, the navbar, footer, and page background can be set to an image
# instead of colour

#navbar-img: "/assets/img/bgimage.png"
#footer-img: "/assets/img/bgimage.png"
#page-img: "/assets/img/bgimage.png"

# Suggest a colour for mobile browsers to use as the browser's theme. This is only supported by a few mobile browsers.
#mobile-theme-col: "#0085A1"

# For any extra visual customization, you can include additional CSS files in every page on your site. List any custom CSS files here
site-css:
  - "/assets/css/skin-switch.css"
  - "/assets/css/demo.css"
  - "/assets/css/custom.css"
  # - "/assets/css/pyb.css"

# If you have common JavaScript files that should be included in every page, list them here
site-js:
  - "/assets/js/pyb.js" 
  - "/assets/js/demo.js"

# --- Web Analytics Section --- #

# Fill in your Google Analytics gtag.js ID to track your website using gtag
#gtag: ""

# Fill in your Google Analytics ID to track your website using Google Analytics
#google_analytics: ""

# Fill in your Cloudflare Analytics beacon token to track your website using Cloudflare Analytics
#cloudflare_analytics: ""

# Google Tag Manager ID
#gtm: ""

# Matomo (aka Piwik) Web statistics
# Uncomment the following section to enable Matomo. The opt-out parameter controls
# whether or not you want to allow users to opt out of tracking.
#matomo:
#  site_id: "9"
#  uri: "demo.wiki.pro"
#  opt-out: true

# --- Comments --- #

# To use Disqus comments, sign up to https://disqus.com and fill in your Disqus shortname (NOT the userid)
#disqus: ""

# To use Facebook Comments, create a Facebook app and fill in the Facebook App ID
#fb_comment_id: ""

# To use Utterances comments: (0) uncomment the following section, (1) fill in
# "repository" (make sure the repository is public), (2) Enable Issues in your repository,
# (3) Install the Utterances app in your repository https://github.com/apps/utterances
# See more details about the parameters below at https://utteranc.es/
#utterances:
#  repository: # GitHub username/repository eg. "daattali/beautiful-jekyll"
#  issue-term: title   # Mapping between blog posts and GitHub issues
#  theme: github-light # Utterances theme
#  label: blog-comments # Label that will be assigned to GitHub Issues created by Utterances

# To use Staticman comments, uncomment the following section. You may leave the reCaptcha
# section commented if you aren't using reCaptcha for spam protection. 
# Using Staticman requires advanced knowledge, please consult 
# https://github.com/eduardoboucas/staticman/ and https://staticman.net/ for further 
# instructions. For any support with staticman please direct questions to staticman and 
# not to BeautifulJekyll.
#staticman:
#  repository : # GitHub username/repository eg. "daattali/beautiful-jekyll"
#  branch     : master # If you're not using `master` branch, then you also need to update the `branch` parameter in `staticman.yml`
#  endpoint   : # URL of your deployment, with a trailing slash eg. "https://<your-api>/v3/entry/github/"
#  reCaptcha:   # (optional, set these parameters in `staticman.yml` as well) 
#    siteKey  : # You need to apply for a site key on Google
#    secret   : # Encrypt your password by going to https://<your-own-api>/v3/encrypt/<your-site-secret>

# To use giscus comments:
# (0) Uncomment the following giscus section, (1) Enable Discussions in your GitHub repository, 
# (2) Install the giscus app in your repository (details at https://giscus.app),
# (3) Fill in *all* the parameters below 
# See more details about giscus and each of the following parameters at https://giscus.app
#giscus:
#  hostname: giscus.app # Replace with your giscus instance's hostname if self-hosting
#  repository: # GitHub username/repository eg. "daattali/beautiful-jekyll"
#  repository-id: # ID of your repository, retrieve this info from https://giscus.app
#  category: Announcements # Category name of your GitHub Discussion posts
#  category-id: # ID of your category, retrieve this info from https://giscus.app
#  mapping: pathname
#  reactions-enabled: 1
#  emit-metadata: 0
#  theme: light

# --- Misc --- #

# Ruby Date Format to show dates of posts
date_format: "%B %-d, %Y"

# Facebook App ID
#fb_app_id: ""

# --- You don't need to touch anything below here (but you can if you want) --- #

# Output options (more information on Jekyll's site)
timezone: "Europe/Berlin"
markdown: kramdown
highlighter: rouge
permalink: /:title/
paginate: 5

kramdown:
  input: GFM

# Default YAML values (more information on Jekyll's site)
defaults:
  -
    scope:
      path: ""
      type: "posts"
    values:
      layout: "post"
      comments: true  # add comments to all blog posts
      social-share: true # add social media sharing buttons to all blog posts
  -
    scope:
      path: "" # any file that's not a post will be a "page" layout by default
    values:
      layout: "page"

# Exclude these files from production site
exclude:
  - CHANGELOG.md
  - CNAME
  - Gemfile
  - Gemfile.lock
  - LICENSE
  - README.md
  - screenshot.png
  - docs/

plugins:
  - jekyll-paginate
  - jekyll-sitemap

# Beautiful Jekyll / Dean Attali
# 2fc73a3a967e97599c9763d05e564189
#
exclude: [vendor]