fabm.def

Bootstrap: localimage
From: xios.sif

####
##
## Authors:      Michael Wathen, Plymouth Marine Laboratory <miwa@pml.ac.uk>
##
## Definition file for building FABM-ERSEM Singularity Container
##
#####

%post
    apt update
    apt install -y zip \
                   cmake \
                   g++

    PATH=$PATH:/opt/mpi/install/bin:/opt/hdf5/install/bin
    LD_LIBRARY_PATH=/opt/hdf5/install/lib:$LD_LIBRARY_PATH

    git clone https://github.com/pmlmodelling/ersem.git ersem
    git clone https://github.com/fabm-model/fabm.git fabm

    export ERSEM_DIR=/ersem
    export FABM_DIR=/fabm
    export FABM_INSTALL=/fabm-gcc

    mkdir $FABM_INSTALL
    cd $FABM_INSTALL
    cmake $FABM_DIR/src -DFABM_HOST=nemo -DCMAKE_Fortran_COMPILER=mpif90 -DFABM_ERSEM_BASE=$ERSEM_DIR -DFABM_EMBED_VERSION=ON -DCMAKE_INSTALL_PREFIX=$FABM_INSTALL -DCMAKE_Fortran_FLAGS:STRING="-fdefault-real-8 -O3 -funroll-all-loops -fcray-pointer -cpp -ffree-line-length-none" #-DCMAKE_BUILD_TYPE=debug
    make
    make install -j8

%environment
    
    export LD_LIBRARY_PATH=/opt/hdf5/install/lib:fabm-gcc:$LD_LIBRARY_PATH


%labels
    Author miwa@pml.ac.uk

%help
    The definition file used to build FABM-ERSEM:

    To build the container, run

        singularity build fabm.sif fabm.def