Problem with Blast2GO wrapper

[gallardoalba]

It seems that this wrapper is not working currently; I tried to run it with the test file, but it triggered an error.

This is the history: https://usegalaxy.eu/u/gallardoalba/h/blast2go-test-history

[peterjc]

Looking at the error details, copied and \n manually replaced with new lines:

Standard out:
b'Blast2GO Pipeline Version 2.5.0
--------------------------------------

Hash for resource ec2go_19072011.txt of type ec created. 4003 associations loaded.
Blast2GO build: 23092011
Change b2g-properties file to: /usr/local/tools/b2g4pipe/2.5/peterjc/blast2go/e23b621eb7bb/Local_2013_Aug.properties
Blast2go.version=2.5.0
Blast2GO can not reach the Internet
Blast2GO started (without GUI)
/data/jwd/main/030/531/30531017/outputs/galaxy_dataset_fa802971-5c52-44b8-a02a-225c2909f718.dat.tmp.xml
Open database connection to database b2gdb on 132.230.68.85 as blast2go with password starts with bl4*******
Annotation of 0 seqs with 0 annots finished. Now searching for orfan IPRs...
B2G-Pipe finished'

No sequences processed!

It could be that Blast2GO really cannot reach the internet, but I suspect it is more likely that it is the server it can't talk to. We'd need to talk to the usegalaxy.eu team to check exactly what Local_2013_Aug.properties has configured, and if other Blast2GO jobs are failing too.

[gallardoalba]

Ping @bgruening

[peterjc]

I've asked on https://gitter.im/usegalaxy-eu/Lobby but don't expect a reply tonight, being evening time in Europe.

I have not tried running the tool locally. Sadly the Continuous Integration testing on this repository is down currently (TravisCI changes).

[gallardoalba]

I've asked on https://gitter.im/usegalaxy-eu/Lobby but don't expect a reply tonight, being evening time in Europe.

I have not tried running the tool locally. Sadly the Continuous Integration testing on this repository is down currently (TravisCI changes).

Nice, thanks!