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Link to Galaxy's ncbi_taxonomy.loc #111

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peterjc opened this issue Sep 13, 2018 · 1 comment
Open

Link to Galaxy's ncbi_taxonomy.loc #111

peterjc opened this issue Sep 13, 2018 · 1 comment

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@peterjc
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peterjc commented Sep 13, 2018

BLAST+ can be used with the NCBI taxonomy files, particularly for building databases - can we tie this into Galaxy's ncbi_taxonomy.loc allowing versioning vs the current behaviour of implicitly using whatever NCBI BLAST+ finds on disk via environment variables?

See https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_ncbi_taxonomy/data_manager

@bernt-matthias
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I have the same for the diamond data manager. Started working on this here bgruening/galaxytools#1011 .. but stalled because I was unsure about the best possible way to implement this (in particular because diamond would need even more information from the taxonomy: bgruening/galaxytools#1011 (comment)).

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