diff --git a/.github/workflows/python-package-conda-pip.yml b/.github/workflows/python-package-conda-pip.yml new file mode 100644 index 0000000..c367703 --- /dev/null +++ b/.github/workflows/python-package-conda-pip.yml @@ -0,0 +1,35 @@ +name: Python Package using Conda + +on: [push] + +jobs: + build-linux: + runs-on: ubuntu-latest + strategy: + max-parallel: 5 + + steps: + - uses: actions/checkout@v3 + - name: Set up Python 3.10 + uses: actions/setup-python@v3 + with: + python-version: '3.10' + - name: Add conda to system path + run: | + # $CONDA is an environment variable pointing to the root of the miniconda directory + echo $CONDA/bin >> $GITHUB_PATH + - name: Install dependencies + run: | + conda install -c conda-forge -c bioconda snakemake pip + pip install . + - name: Test panoptes + run: | + panoptes + response=$(curl http://127.0.0.1:5000/api/service-info) + if [ "$response" = "{\"status\":\"running\"}" ]; then + echo "Success"; + exit 0; + else + echo "Fail"; + exit 1; + fi \ No newline at end of file