diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
index bed8b76..f3fec77 100644
--- a/assets/multiqc_config.yml
+++ b/assets/multiqc_config.yml
@@ -1,5 +1,5 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/oist/LuscombeU_stlpreprocess/releases/tag/1.0.0" target="_blank">oist/LuscombeU_stlpreprocess</a>
+  This report has been generated by the <a href="https://github.com/oist/LuscombeU_stlpreprocess/releases/tag/2.0.0" target="_blank">oist/LuscombeU_stlpreprocess</a>
   analysis pipeline.
 report_section_order:
   "oist-stlpreprocess-methods-description":
diff --git a/nextflow.config b/nextflow.config
index cddf9ad..73f549b 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -227,7 +227,7 @@ manifest {
     description     = """Download and pre-process genomes for the Scrambling in the Tree of Life project"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '1.0.0'
+    version         = '2.0.0'
     doi             = ''
 }