-
Notifications
You must be signed in to change notification settings - Fork 6
/
DeepRiPe.yml
253 lines (252 loc) · 7.61 KB
/
DeepRiPe.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
name: deepreg
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- bcftools=1.9=h47928c2_2
- bedtools=2.27.1=he860b03_3
- biopython=1.70=np112py36_1
- bleach=1.4.2=py36_0
- htslib=1.9=h47928c2_5
- intervene=0.6.4=pyr332h24bf2e0_1
- libdeflate=1.0=h14c3975_1
- logomaker=0.8=py_0
- pybedtools=0.8.0=py36he860b03_1
- pysam=0.15.2=py36h1671916_1
- samtools=1.9=h91753b0_5
- absl-py=0.7.0=py36_1000
- astor=0.7.1=py_0
- attrs=18.2.0=py_0
- backcall=0.1.0=py_0
- binutils_impl_linux-64=2.31.1=h6176602_1
- binutils_linux-64=2.31.1=h6176602_3
- blosc=1.16.3=hf484d3e_0
- bzip2=1.0.6=h14c3975_1002
- c-ares=1.15.0=h14c3975_1001
- ca-certificates=2019.11.28=hecc5488_0
- cairo=1.14.12=h80bd089_1005
- certifi=2019.11.28=py36_0
- curl=7.64.0=h646f8bb_2
- cycler=0.10.0=py_1
- decorator=4.3.2=py_0
- dill=0.2.9=py36_0
- entrypoints=0.3=py36_1000
- expat=2.2.5=hf484d3e_1002
- fontconfig=2.13.1=h2176d3f_1000
- freetype=2.9.1=h94bbf69_1005
- gast=0.2.2=py_0
- gcc_impl_linux-64=7.3.0=habb00fd_1
- gcc_linux-64=7.3.0=h553295d_3
- gettext=0.19.8.1=h9745a5d_1001
- glib=2.56.2=had28632_1001
- graphite2=1.3.13=hf484d3e_1000
- gxx_impl_linux-64=7.3.0=hdf63c60_1
- gxx_linux-64=7.3.0=h553295d_3
- h5py=2.9.0=nompi_py36hf008753_1102
- harfbuzz=1.9.0=he243708_1001
- hdf5=1.10.4=nompi_h11e915b_1105
- html5lib=1.0.1=py_0
- icu=58.2=hf484d3e_1000
- ipykernel=5.1.0=py36h24bf2e0_1002
- ipython=7.3.0=py36h24bf2e0_0
- ipython_genutils=0.2.0=py_1
- jedi=0.13.3=py36_0
- jinja2=2.10=py_1
- jpeg=9c=h14c3975_1001
- jsonschema=3.0.0=py36_0
- jupyter_client=5.2.4=py_1
- jupyter_core=4.4.0=py_0
- jupyterlab=0.35.4=py36_0
- jupyterlab_server=0.2.0=py_0
- keras=2.2.4=py36_0
- keras-applications=1.0.4=py_1
- keras-preprocessing=1.0.2=py_1
- kiwisolver=1.0.1=py36h6bb024c_1002
- krb5=1.16.3=h05b26f9_1001
- libcurl=7.64.0=h541490c_2
- libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=hf484d3e_1005
- libgcc-ng=7.3.0=hdf63c60_0
- libgfortran=3.0.0=1
- libgfortran-ng=7.2.0=hdf63c60_3
- libgpuarray=0.7.6=h14c3975_1003
- libiconv=1.15=h14c3975_1004
- libpng=1.6.36=h84994c4_1000
- libprotobuf=3.6.1=hdbcaa40_1001
- libsodium=1.0.16=h14c3975_1001
- libssh2=1.8.0=h90d6eec_1004
- libstdcxx-ng=7.3.0=hdf63c60_0
- libtiff=4.0.10=h648cc4a_1001
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.8=h143f9aa_1005
- lzo=2.10=h14c3975_1000
- make=4.2.1=h14c3975_2004
- mako=1.0.7=py_1
- markdown=2.6.11=py_0
- markupsafe=1.1.1=py36h14c3975_0
- matplotlib=3.0.3=py36_0
- matplotlib-base=3.0.3=py36h167e16e_0
- mistune=0.8.4=py36h14c3975_1000
- mkl_fft=1.0.10=py36_0
- mkl_random=1.0.2=py36_0
- mmtf-python=1.1.2=py_0
- mock=2.0.0=py36_1001
- msgpack-python=0.6.1=py36h6bb024c_0
- multiprocess=0.70.7=py36h14c3975_0
- nb_conda_kernels=2.2.1=py36_0
- nbconvert=5.3.1=py_1
- nbformat=4.4.0=py_1
- ncurses=6.1=hf484d3e_1002
- notebook=5.7.4=py36_1000
- numexpr=2.6.9=py36h637b7d7_1000
- olefile=0.46=py_0
- openblas=0.3.3=h9ac9557_1001
- openssl=1.1.1d=h516909a_0
- pandas=0.24.1=py36hf484d3e_0
- pandoc=2.6=1
- pandocfilters=1.4.2=py_1
- pango=1.40.14=hf0c64fd_1003
- parso=0.3.4=py_0
- patsy=0.5.1=py_0
- pbr=5.1.2=py_0
- pexpect=4.6.0=py36_1000
- pickleshare=0.7.5=py36_1000
- pillow=5.4.1=py36h00a061d_1000
- pip=19.0.3=py36_0
- pixman=0.34.0=h14c3975_1003
- prometheus_client=0.6.0=py_0
- prompt_toolkit=2.0.9=py_0
- protobuf=3.6.1=py36hf484d3e_1001
- pthread-stubs=0.4=h14c3975_1001
- ptyprocess=0.6.0=py36_1000
- pygments=2.3.1=py_0
- pygpu=0.7.6=py36h3010b51_1000
- pyparsing=2.3.1=py_0
- pyqt=5.6.0=py36h13b7fb3_1008
- pyrsistent=0.14.11=py36h14c3975_0
- pytables=3.5.1=py36h442f067_1
- python=3.6.7=h381d211_1003
- python-dateutil=2.8.0=py_0
- pytz=2018.9=py_0
- pyyaml=3.13=py36h14c3975_1001
- pyzmq=18.0.0=py36h0e1adb2_0
- r=3.5.1=r351_1000
- r-assertthat=0.2.0=r351h6115d3f_1001
- r-base=3.5.1=h391c2eb_5
- r-boot=1.3_20=r351_1000
- r-cairo=1.5_9=r351h96ca727_1002
- r-class=7.3_15=r351h96ca727_1000
- r-cli=1.0.1=r351h6115d3f_1000
- r-cluster=2.0.7_1=r351ha65eedd_1000
- r-codetools=0.2_16=r351h6115d3f_1000
- r-colorspace=1.4_0=r351h96ca727_0
- r-corrplot=0.84=r351_1001
- r-crayon=1.3.4=r351h6115d3f_1001
- r-digest=0.6.18=r351h96ca727_1000
- r-fansi=0.4.0=r351h96ca727_1000
- r-foreign=0.8_71=r351h96ca727_1002
- r-ggplot2=3.1.0=r351h6115d3f_1000
- r-glue=1.3.0=r351h14c3975_1002
- r-gridextra=2.3=r351h6115d3f_1001
- r-gtable=0.2.0=r351h6115d3f_1001
- r-kernsmooth=2.23_15=r351ha65eedd_1002
- r-labeling=0.3=r351h6115d3f_1001
- r-lattice=0.20_38=r351h96ca727_1000
- r-lazyeval=0.2.1=r351h96ca727_1002
- r-magrittr=1.5=r351h6115d3f_1001
- r-mass=7.3_51.1=r351h96ca727_1000
- r-matrix=1.2_15=r351h96ca727_1000
- r-mgcv=1.8_26=r351h96ca727_1000
- r-munsell=0.5.0=r351h6115d3f_1001
- r-nlme=3.1_137=r351ha65eedd_1000
- r-nnet=7.3_12=r351h96ca727_1002
- r-pillar=1.3.1=r351h6115d3f_1000
- r-pkgconfig=2.0.2=r351h6115d3f_1001
- r-plyr=1.8.4=r351h29659fb_1002
- r-r6=2.4.0=r351h6115d3f_0
- r-rcolorbrewer=1.1_2=r351h6115d3f_1001
- r-rcpp=1.0.0=r351h29659fb_1000
- r-recommended=3.5.1=r351_1001
- r-reshape2=1.4.3=r351h29659fb_1003
- r-rlang=0.3.1=r351h96ca727_0
- r-rpart=4.1_13=r351h96ca727_1002
- r-scales=1.0.0=r351h29659fb_1001
- r-spatial=7.3_11=r351h96ca727_1002
- r-stringi=1.2.4=r351h29659fb_1001
- r-stringr=1.4.0=r351h6115d3f_0
- r-survival=2.43_3=r351h96ca727_1000
- r-tibble=2.0.1=r351h96ca727_0
- r-upsetr=1.3.3=r351_1001
- r-utf8=1.1.4=r351h96ca727_1000
- r-viridislite=0.3.0=r351h6115d3f_1001
- r-withr=2.1.2=r351h6115d3f_1000
- readline=7.0=hf8c457e_1001
- reportlab=3.5.13=py36hbd3ef63_1000
- seaborn=0.9.0=py_0
- send2trash=1.5.0=py_0
- setuptools=40.8.0=py36_0
- sip=4.18.1=py36hf484d3e_1000
- six=1.12.0=py36_1000
- sqlite=3.26.0=h67949de_1000
- statsmodels=0.9.0=py36h3010b51_1000
- tensorboard=1.10.0=py36_0
- tensorflow=1.1.0=py36_0
- termcolor=1.1.0=py_2
- terminado=0.8.1=py36_1001
- testpath=0.4.2=py36_1000
- theano=1.0.4=py36hf484d3e_1000
- tk=8.6.9=h84994c4_1000
- tornado=5.1.1=py36h14c3975_1000
- traitlets=4.3.2=py36_1000
- wcwidth=0.1.7=py_1
- webencodings=0.5.1=py_1
- werkzeug=0.14.1=py_0
- wheel=0.33.1=py36_0
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.9=h14c3975_1004
- xorg-libsm=1.2.3=h4937e3b_1000
- xorg-libx11=1.6.7=h14c3975_1000
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.2=h14c3975_1007
- xorg-libxext=1.3.3=h14c3975_1004
- xorg-libxrender=0.9.10=h14c3975_1002
- xorg-libxt=1.1.5=h14c3975_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.4=h14c3975_1001
- yaml=0.1.7=h14c3975_1001
- zeromq=4.2.5=hf484d3e_1006
- zlib=1.2.11=h14c3975_1004
- _r-mutex=1.0.0=anacondar_1
- blas=1.0=mkl
- bwidget=1.9.11=1
- dbus=1.13.2=h714fa37_1
- grpcio=1.16.1=py36hf8bcb03_1
- gsl=2.2.1=h0c605f7_3
- gst-plugins-base=1.14.0=hbbd80ab_1
- gstreamer=1.14.0=hb453b48_1
- intel-openmp=2019.1=144
- mkl=2018.0.3=1
- numpy=1.12.1=py36he24570b_1
- numpy-base=1.15.4=py36h81de0dd_0
- pcre=8.42=h439df22_0
- qt=5.6.3=h8bf5577_3
- scikit-learn=0.20.1=py36h4989274_0
- scipy=1.1.0=py36hd20e5f9_0
- tktable=2.10=h14c3975_0
- pip:
- concise==0.6.6
- descartes==1.1.0
- future==0.17.1
- gtfparse==1.2.0
- hyperopt==0.1.2
- msgpack==0.6.1
- networkx==2.2
- pymongo==3.7.2
- shapely==1.6.4.post2
- tables==3.5.1
- tqdm==4.31.1
prefix: /home/mghanba/anaconda3/envs/deepreg