| marp | paginate | theme | license | title | date | author | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
true |
true |
marp-theme_dataplant-ceplas-mibinet-ccby |
[CC-BY 4.0](https://creativecommons.org/licenses/by/4.0/) |
Swate Intro |
2023-11-14 |
|
https://isa-tools.org/ | https://www.commonwl.org/ https://www.researchobject.org/ro-crate/ | https://git-scm.com
ISA Tools: https://isa-tools.org/format/specification.html
- Samples are linked study-to-assay, assay-to-assay
- Raw data is linked to assays
- Protocols can be referenced
- ...
- Low-friction metadata annotation
- Familiar spreadsheet, row/column-based environment
- Low-friction metadata annotation
- Familiar spreadsheet, row/column-based environment
Swate can be used for the annotation of isa.study.xlsx and isa.assay.xlsx files
- Input (e.g. Source Name, Sample Name)
- Protocol columns
- Characteristic // Parameter // Factor // Component
- Output (e.g. Sample Name, Raw Data File, Derived Data File)
Let's take a detour on Annotation Principles
<style scoped> h1{ text-align: left } section { text-align: center; } </style>
Enable related term directed search to directly fill cells with child terms
Metadata standards or repository requirements can be represented as templates
Facilities can define their most common workflows as templates
<style scoped> h1{ text-align: left } section { text-align: center; } </style>- DataPLANT curated
- Community templates
