| marp | paginate | theme | license | title | date | author | |||||||
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[CC-BY 4.0](https://creativecommons.org/licenses/by/4.0/) |
Overview DataPLANT |
2023-11-14 |
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Your entire investigation in a single unified bag
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Facilities and labs can define their common workflows as templates
Weil, H.L., Schneider, K., et al. (2023), PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research. Plant J. https://doi.org/10.1111/tpj.16474
Weil, H.L., Schneider, K., et al. (2023), PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research. Plant J. https://doi.org/10.1111/tpj.16474
- Full ARC compatibility
- Automated metadata generation
- Specialized tools and workflows for ‘omics processing and analysis
- Public repository compatibility
- Galaxy teaching resource for data analysis
- Streamlined exchange of (meta)data
- Communication and project management
Weil, H.L., Schneider, K., et al. (2023), PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research. Plant J. https://doi.org/10.1111/tpj.16474
Zhou et al. (2023), DataPLAN: a web-based data management plan generator for the plant sciences, bioRxiv 2023.07.07.548147; doi: https://doi.org/10.1101/2023.07.07.548147
DataPLANT employs a data-centric approach to RDM
(Meta)data transparency with tool assistance but no technical lock-in
- RO-Crate: standardized exchange
- ISA: structured, machine-readable metadata
- CWL: reproducible, re-usable data analysis
- Git: version control
https://isa-tools.org/ | https://www.commonwl.org/ https://www.researchobject.org/ro-crate/ | https://git-scm.com