From a071418866800e9aa5171f3ed4ee65d39680f39d Mon Sep 17 00:00:00 2001 From: fstein88 <165915383+fstein88@users.noreply.github.com> Date: Thu, 19 Sep 2024 14:40:36 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20nfdi4pla?= =?UTF-8?q?nts/nfdi4plants.github.io@b786c2bee89dd0bc452131dfdba630cdb038a?= =?UTF-8?q?766=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .../news/2024-09-05_ipk-new-participant.html | 83 +++++++++++++++++++ index.html | 32 +++---- news.html | 20 +++++ style/constants.css | 2 +- style/style.css | 2 +- 5 files changed, 121 insertions(+), 18 deletions(-) create mode 100644 content/news/2024-09-05_ipk-new-participant.html diff --git a/content/news/2024-09-05_ipk-new-participant.html b/content/news/2024-09-05_ipk-new-participant.html new file mode 100644 index 00000000..8131612a --- /dev/null +++ b/content/news/2024-09-05_ipk-new-participant.html @@ -0,0 +1,83 @@ + + + + + + + nfdi4plants - News + + + + + + + + + + +
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+ IPK Gatersleben joins DataPLANT as participating institution +

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Following its community centered strategy, DataPLANT took in a new participant broadening its base and now including a non-university research institution in the field of plant biology. The research goals of the Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) are directed towards an efficient and sustainable supply of food, energy and raw materials and thus towards meeting global challenges. At the IPK, the conservation, research and utilisation of the genetic diversity of crop plants in the Federal Ex situ Gene Bank are combined with innovative research approaches in the fields of molecular genetics, genome research, molecular plant biology, systems biology, bioinformatics and modelling.

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Uwe Scholz is the representative and PI joining DataPLANT. He is head of the Bioinformatics and Information Technology group and coordinates the Biodiversity Informatics research at IPK. He focuses on management of crop data and on the development of reusable interactive data visualization and analysis tools. The main data domains are plant phenotypic and genotypic data. His group is contributing to the development standards like MIAPPE (Minimum Information about a Plant Phenotyping Experiment) and to the specification of programmatic interface like BrAPI (Breeding API). He is leading the German Crop BioGreenformatics Network (GCBN), Center of the German Network for Bioinformatics Infrastructure (de.NBI) and is a member of the ELIXIR Plant Science and Biodiversity communities. Within de.NBI he is leading the working group “Services and Service Monitoring”. Besides DataPLANT, he is also co-speaker of the NFDI4Biodiversity consortium and fosters our cross-community activities.

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As a member of DataPLANT, the IPK will contribute by undertaking the following activities:

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  • The ISA Wizard tool with MIAPPE profile was and is being developed by IPK in collaboration with DataPLANT during the Biohackathon Germany in 2022, 2023 and now also in 2024 (see: https://doi.org/10.37044/osf.io/ekhdw). This tool allows the step-by-step and user-friendly generation of ISA JSON according to the MIAPPE standard. The ongoing tool development will be geard to transfer it to active use in the community.
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  • The ARCtrl library developed by DataPLANT offers serialization as an Annotated Research Context (ARC) and a connection to the DataHUB via the Gitlab API. IPK has developed MIRA, a tool that enables the automated instantiation of a BrAPI phenotyping server on an ARC RO-Crate. The ARC data can then be accessed programmatically. This work will be incorporated by the IPK in a use case in NFDI4Biodiversity. This demonstrates how results from DataPLANT are used in other NFDI consortia and is an important step towards OneNFDI.
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  • Scorpion is a KPI dashboard that is being developed on the basis of preliminary work from de.NBI as part of the NFDI4Biodiversity project. It enables the collection, storage and visualization of KPI measurements for the evaluation of service quality. As the developer of Scorpion, IPK will adapt this tool for the DataPLANT application and prepare it for use.
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Find out more about the IPK here

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- 13 Aug + 5 Sep

- DataPLANT renewal proposal submitted + IPK Gatersleben joins DataPLANT as participating institution

- After several months of preparation, we submitted the DataPLANT proposal for the second funding phase. A big thank you to everyone for their professional and intellectual input, as well as to the writing team for their commitment and perseverance! The fundamental goal of DataPLANT is to foster community participation and engagement by providing support that facilitates research data management (RDM) and FAIR compliance for researchers. It aims to bridge the gap... + Following its community centered strategy DataPLANT took in a new participant broadening its base and now including a non-university research institution in the field of plant biology. The research goals of the Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) are directed towards an efficient and sustainable supply of food, energy and raw materials and thus towards meeting global challenges. At the IPK...
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- 7 Aug + 13 Aug

- Notification on accepted contributions to the Base4NFDI User Conference + DataPLANT renewal proposal submitted

- DataPLANT is among the initiators and strong supporters of Base4NFDI, actively embracing joint efforts on infrastructure development. Thus we contributed to the recent call-for-participation to the first Base4NFDI User Conference held in Berlin in November 2024. This two-day event aims to showcase basic services... + After several months of preparation, we submitted the DataPLANT proposal for the second funding phase. A big thank you to everyone for their professional and intellectual input, as well as to the writing team for their commitment and perseverance! The fundamental goal of DataPLANT is to foster community participation and engagement by providing support that facilitates research data management (RDM) and FAIR compliance for researchers. It aims to bridge the gap...
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- 29 Jul + 7 Aug

- Second overview of NFDI collaborations published + Notification on accepted contributions to the Base4NFDI User Conference

- The National Research Data Infrastructure (NFDI) in Germany has established itself and now comprises 26 consortia covering various disciplines. The main aim of the NFDI is to establish a cross-disciplinary research data infrastructure and to make scientific research more efficient. The initiative thus contributes to strengthening the research landscape in Germany and creates a solid foundation for future scientific breakthroughs. An overview from January 2023 described the extensive collaborative activities... + DataPLANT is among the initiators and strong supporters of Base4NFDI, actively embracing joint efforts on infrastructure development. Thus we contributed to the recent call-for-participation to the first Base4NFDI User Conference held in Berlin in November 2024. This two-day event aims to showcase basic services...
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- 18 Jun + 29 Jul

- DataPLANT applies for continuation within the scope of the 2nd funding phase of the NFDI + Second overview of NFDI collaborations published

- On June 18 2024, DataPLANT sent the letter of intent to the DFG, which is the prerequisite for submitting a follow-up proposal. We plan to largely retain the structure of the task areas, but make adjustments in a few areas. We are aiming to involve the community more closely, following the reviewers' recommendations for focus and consolidation. For this reason, the community has been expanded regarding the number of participants and participating institutions. It is intended to provide geostrategic coverage and data steward support... + The National Research Data Infrastructure (NFDI) in Germany has established itself and now comprises 26 consortia covering various disciplines. The main aim of the NFDI is to establish a cross-disciplinary research data infrastructure and to make scientific research more efficient. The initiative thus contributes to strengthening the research landscape in Germany and creates a solid foundation for future scientific breakthroughs. An overview from January 2023 described the extensive collaborative activities...
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+ IPK Gatersleben joins DataPLANT as participating institution +

+ Following its community centered strategy DataPLANT took in a new participant broadening its base and now including a non-university research institution in the field of plant biology. The research goals of the Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) are directed towards an efficient and sustainable supply of food, energy and raw materials and thus towards meeting global challenges. At the IPK... +
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