A question about the function“user_SNPsToKeep”

[Hrq98]

Hi，
When I use the function “user_SNPsToKeep”，there is always a problem：
Error in tidy_inputGWAS(exposure, need_chrpos, verbose) :
object 'need_chrpos' not found
I have tried several datasets and examined my imput data but sill have the problem.When I use the pruning, it doesn't show up.
Please advise.Thanks

[lcpilling]

Hi @Hrq98 you can install my pull request using remotes::install_github("n-mounier/MRlap#13", force=TRUE) which should fix the issue, until Ninon gets time to check it properly :)

[Hrq98]

Hi @Hrq98 you can install my pull request using remotes::install_github("n-mounier/MRlap#13", force=TRUE) which should fix the issue, until Ninon gets time to check it properly :)

Thanks so much！

[Shiyuan-228]

Hi，
When I use the function “MRlap”，there is always a problem：
Error in tidy_inputGWAS(exposure, need_chrpos, verbose) : 'HeaderGWAS' not found
I have tried remotes::install_github("#13", force=TRUE), but it shows Downloading GitHub repo lukepilling/MRlap@patch-1
Error in utils::download.file(url, path, method = method, quiet = quiet, :
无法打开URL'https://api.github.com/repos/lukepilling/MRlap/tarball/patch-1'
Please advise.Thanks

[lcpilling]

PR #13 no longer exists because it has been merged with the main branch (@n-mounier maybe close this issue?). @Shiyuan-228: reinstall MRlap from the main repository and see if you still get the "HeaderGWAS" error. If so, please create a new issue, describing the data you used etc.

[Shiyuan-228]

I've created a new issue（#15），describing the data I used.
Please advise.Thanks