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NC_035109.1_reduced_AAE_genome.gff
12 lines (12 loc) · 1.82 KB
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NC_035109.1_reduced_AAE_genome.gff
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# gffread -r NC_035109.1:409688100..409777670 NC_035109.1_reduced_AAE_genome.gff -R -O -F -E -o - | perl -aF'/\t/' -pe 'next if /^#/; $F[3]+=(-409688100+1); $F[4]+=(-409688100+1); $_ = join("\t", @F);'
# gffread v0.9.12
##gff-version 3
NC_035109.1 Gnomon gene 60 10993 . + . ID=gene18033;geneID=gene18033;gene_name=LOC5573211;Dbxref=GeneID:5573211;Name=LOC5573211;gbkey=Gene;gene_biotype=protein_coding
NC_035109.1 Gnomon mRNA 60 10993 . + . ID=rna32220;Parent=gene18033;geneID=gene18033;gene_name=LOC5573211;Dbxref=GeneID:5573211,Genbank:XM_001654370.2;Name=XM_001654370.2;gbkey=mRNA;model_evidence=Supporting evidence includes similarity to: 6 mRNAs%2C 629 ESTs%2C 16 Proteins%2C 200 long SRA reads%2C and 99%25 coverage of the annotated genomic feature by RNAseq alignments%2C including 112 samples with support for all annotated introns;product=polyadenylate-binding protein;transcript_id=XM_001654370.2;protein_id=XP_001654420.1
NC_035109.1 Gnomon exon 60 241 . + . Parent=rna32220;Dbxref=GeneID:5573211,Genbank:XM_001654370.2;gbkey=mRNA;product=polyadenylate-binding protein;transcript_id=XM_001654370.2
NC_035109.1 Gnomon exon 302 591 . + . Parent=rna32220;Dbxref=GeneID:5573211,Genbank:XP_001654420.1;gbkey=CDS;product=polyadenylate-binding protein;transcript_id=XM_001654370.2;Name=XP_001654420.1
NC_035109.1 Gnomon exon 7369 8835 . + . Parent=rna32220;Dbxref=GeneID:5573211,Genbank:XP_001654420.1;gbkey=CDS;product=polyadenylate-binding protein;transcript_id=XM_001654370.2;Name=XP_001654420.1
NC_035109.1 Gnomon exon 8892 10993 . + . Parent=rna32220;Dbxref=GeneID:5573211,Genbank:XP_001654420.1;gbkey=CDS;product=polyadenylate-binding protein;transcript_id=XM_001654370.2;Name=XP_001654420.1
NC_035109.1 Gnomon CDS 426 591 . + 0 Parent=rna32220
NC_035109.1 Gnomon CDS 7369 8835 . + 2 Parent=rna32220
NC_035109.1 Gnomon CDS 8892 9145 . + 2 Parent=rna32220