From 12c76bd9e72da45a96d7eae7be23dd5297d1d4f4 Mon Sep 17 00:00:00 2001 From: Silas Kieser Date: Mon, 17 Jul 2023 11:33:44 +0200 Subject: [PATCH] add timetable --- README.md | 43 +++++++++++++++++++++++++++++++++---------- 1 file changed, 33 insertions(+), 10 deletions(-) diff --git a/README.md b/README.md index e1affec..9896375 100644 --- a/README.md +++ b/README.md @@ -11,15 +11,15 @@ # ISMB 2023 Tutorial -### Particpants To-Do list -#### At the beginning +## Particpants To-Do list +**At the beginning** - [ ] Open the [Mentimeter webpage](https://www.menti.com/almxgknfw2bg) - [ ] Do the [Setup](https://github.com/metagenome-atlas/Tutorial/blob/master/Setup.md) -#### At the end +**At the end** - [ ] Fill in the [ISMB Feedback form](https://docs.google.com/forms/d/e/1FAIpQLSf_0RTzbDDMYLoB6sshSJ_uKtbTrC1xESEknfIexsdboh7lHA/viewform) at the end of the course. -### Links to interactive Tutorials +## Links to interactive Tutorials - Part 1: [Run a metagenome analysis with tree commands](https://metagenome-atlas.shinyapps.io/TryAtlas) - Part 1b: [Closer look at the reports](https://metagenome-atlas.shinyapps.io/Output_human) @@ -27,19 +27,42 @@ If you have a long error message don't write them in the chat. [Write an isue][chat]. -### Slides + +## Times + +**Part 1**: Monday, July 17 (14:00 – 18:00 CEST) + +**Part 2**: Tuesday, July 18 (14:00 – 18:00 CEST) + +| CEST | | Day 1 | +|-------|-----------------|---------------------------------------------------------| +| 14:00 | | Hello and setup (see to-do list above) | +| 14:15 | | Objectives | +| 14:30 | Lecture | Introduction Metagenomic | +| 14:45 | Lecture | Overview reference-based or assembly-based metagenomics | +| 15:00 | Lecture | Q & A | +| 15:15 | Tutorial | Tutorial part 1 | +| 15:30 | Tutorial | | +| 15:45 | Tutorial | | +| 16:00 | **Break** | | +| 16:15 | | | +| 16:30 | Tutorial | Solution to tutorial | +| 16:45 | Lecture | Assembly | +| 17:00 | Guided Tutorial | Assembly graph | +| 17:15 | Tutorial | Tutorial part 1 | +| 17:30 | Tutorial | | +| 17:45 | Lecture | Example of a study with Atlas | +| 18:00 | End | | + +## Slides Slides will be posted on https://silask.github.io/talk/tutorial-at-the-ismb-2023/ -### Instructors +## Instructors - [Silas Kieser](https://silask.github.io/) @silask - [Matija Tričković](https://www.linkedin.com/in/trickovicmatija) @trickovicmatija -### Times - -**Part 1**: Monday, July 17 (14:00 – 18:00 CEST) -**Part 2**: Tuesday, July 18 (14:00 – 18:00 CEST) # General Metagenome-Atlas Tutorial