Q: HMMRATAC output and options for _summit.bed

[kawairine]

Hi,

I have the same question as in (#592 (comment))

1. and in general, are the columns generated here the same as in the original paper? (https://github.com/LiuLabUB/HMMRATAC/blob/master/HMMRATAC_Guide.md#commandline-options),

2. Another question: In the original implementation, there is a Name_summits.bed output, is there a way I can also call summit in your implementation?

Many thanks!

Best,
Kawai

[mrendleman]

For question 1: the columns are mostly the same as the original paper, though I don't think the changes are documented anywhere yet. See this comment for my interpretation of the differences.