From 51fc981768fa66d557ba576fcb2dfaa43902128f Mon Sep 17 00:00:00 2001
From: Paul Xu <yang_xu@brown.edu>
Date: Mon, 26 Aug 2024 09:40:39 -0400
Subject: [PATCH] separate fast and slow tests

---
 .../{run_tests.yml => run_fast_tests.yml}     |  5 +--
 .github/workflows/run_slow_tests.yml          | 43 +++++++++++++++++++
 2 files changed, 44 insertions(+), 4 deletions(-)
 rename .github/workflows/{run_tests.yml => run_fast_tests.yml} (93%)
 create mode 100644 .github/workflows/run_slow_tests.yml

diff --git a/.github/workflows/run_tests.yml b/.github/workflows/run_fast_tests.yml
similarity index 93%
rename from .github/workflows/run_tests.yml
rename to .github/workflows/run_fast_tests.yml
index 55f59f84..e2df73d0 100644
--- a/.github/workflows/run_tests.yml
+++ b/.github/workflows/run_fast_tests.yml
@@ -1,4 +1,4 @@
-name: Run tests
+name: Run fast tests
 
 on:
   pull_request:
@@ -42,8 +42,5 @@ jobs:
       - name: Run fast tests
         run: pytest -n auto -s --ignore=tests/slow
 
-      - name: Run slow tests
-        run: pytest -s tests/slow
-
       - name: build docs
         run: mkdocs build
diff --git a/.github/workflows/run_slow_tests.yml b/.github/workflows/run_slow_tests.yml
new file mode 100644
index 00000000..74522a1c
--- /dev/null
+++ b/.github/workflows/run_slow_tests.yml
@@ -0,0 +1,43 @@
+name: Run slow tests
+
+on:
+  pull_request:
+
+jobs:
+  run_tests:
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -el {0}
+
+    strategy:
+      fail-fast: true
+      matrix:
+        python-version: ["3.10", "3.11"]
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Setup miniconda
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          python-version: ${{ matrix.python-version }}
+          miniforge-variant: Mambaforge
+          mamba-version: "*"
+          channels: conda-forge,defaults
+          channel-priority: true
+
+      - name: install pymc and poetry
+        run: |
+          mamba info
+          mamba install -c conda-forge pymc poetry
+
+      - name: install hssm
+        run: |
+          poetry export --with dev --without-hashes --output=req.txt
+          grep -v -E '^jax\[cuda12\]|^nvidia|^jax\-cuda12' req.txt >> requirements.txt
+          pip install -r requirements.txt
+          pip install -e .
+
+      - name: Run slow tests
+        run: pytest -s tests/slow