README.md

ruby-odgi

🧬 odgi - Optimized Dynamic Genome/Graph Implementation - for Ruby

🚧 Under construction

Installation

git clone --recursive https://github.com/kojix2/ruby-odgi # submodules
cd ruby-odgi
bundle install
bundle exec rake jemalloc:build # with the option --disable-initial-exec-tls
bundle exec rake odgi:build     # Build odgi using the jemalloc library compiled above
bundle exec rake compile
bundle exec rake install

Usage

Right now you can only get a version number.

require "odgi"

Odgi.odgi_version

Development

• rice - Ruby Interface for C++ Extensions
• Why is jemalloc included as a submodule in the repository?
  • See jemalloc 5.0.1 TLS error: cannot allocate memory in static TLS block
  • Compiling jemalloc with the --disable-initial-exec-tls option and using the library with odgi.

License

• MIT License