diff --git a/docs/dockers_consensus.md b/docs/dockers_consensus.md new file mode 100644 index 0000000..349d1e7 --- /dev/null +++ b/docs/dockers_consensus.md @@ -0,0 +1,11 @@ +# Dockers of kfdrc-germline-snv-annot-workflow.cwl + +TOOL|DOCKER +-|- +bcftools_annotate.cwl|pgc-images.sbgenomics.com/d3b-bixu/vcfutils:latest +bcftools_filter_vcf.cwl|pgc-images.sbgenomics.com/d3b-bixu/bvcftools:latest +bcftools_strip_ann.cwl|pgc-images.sbgenomics.com/d3b-bixu/vcfutils:latest +echtvar_anno.cwl|pgc-images.sbgenomics.com/d3b-bixu/echtvar:0.2.0 +generic_rename_outputs.cwl|None +normalize_vcf.cwl|pgc-images.sbgenomics.com/d3b-bixu/vcfutils:latest +variant_effect_predictor_105.cwl|ensemblorg/ensembl-vep:release_105.0 diff --git a/docs/dockers_somatic.md b/docs/dockers_somatic.md new file mode 100644 index 0000000..cc99a97 --- /dev/null +++ b/docs/dockers_somatic.md @@ -0,0 +1,14 @@ +# Dockers of kfdrc-somatic-snv-annot-workflow.cwl + +TOOL|DOCKER +-|- +add_strelka2_fields.cwl|pgc-images.sbgenomics.com/d3b-bixu/add-strelka2-fields:1.0.0 +bcftools_filter_vcf.cwl|pgc-images.sbgenomics.com/d3b-bixu/bvcftools:latest +bcftools_strip_ann.cwl|pgc-images.sbgenomics.com/d3b-bixu/vcfutils:latest +echtvar_anno.cwl|pgc-images.sbgenomics.com/d3b-bixu/echtvar:0.2.0 +gatk_variant_filter.cwl|pgc-images.sbgenomics.com/d3b-bixu/gatk:4.1.1.0 +generic_rename_outputs.cwl|None +hotspots_annotation.cwl|quay.io/biocontainers/pysam:0.21.0--py310h41dec4a_1 +kf_mskcc_vcf2maf.cwl|pgc-images.sbgenomics.com/d3b-bixu/kf_vcf2maf:v1.0.3 +normalize_vcf.cwl|pgc-images.sbgenomics.com/d3b-bixu/vcfutils:latest +variant_effect_predictor_105.cwl|ensemblorg/ensembl-vep:release_105.0