Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[ENH] Update Warp datatype and logic #390

Open
fraimondo opened this issue Nov 6, 2024 · 0 comments
Open

[ENH] Update Warp datatype and logic #390

fraimondo opened this issue Nov 6, 2024 · 0 comments

Comments

@fraimondo
Copy link
Contributor

  1. Modify the Warp datatype to be a "list" of mappings from / to spaces.
  2. Add a "warper" key to the Warp datatype indicating which warper was used: fsl or ants for the moment.
  3. Modify the SpaceWarper to allow to "auto" select the warper based on the dataset. This should require both FSL and ANTs as external dependencies. This only works if reference is "T1w": "auto" is not defined for junifer internal transforms (i.e. between template spaces)
  4. Modify coordinates/masks/parcellations so they check for the right transform and use the "warper" parameter accordingly.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant