[BUG]: DataladDatagrabber is not using the WorkdirManager

[fraimondo]

Is there an existing issue for this?

• I have searched the existing issues

Current Behavior

When using any DataladBase datagrabber, I observed that it was being cloned in a directory outside what I've set in the workdir manager.

Expected Behavior

The datasets should be cloned within the workdir manager path

Steps To Reproduce

1. Run any yaml with debug logging and set the workdir to something else than /tmp
2. Check where the dataset is being cloned

Environment

junifer:
  version: 0.0.6.dev176
python:
  version: 3.12.6
  implementation: CPython
dependencies:
  click: 8.1.7
  numpy: 1.26.4
  scipy: 1.14.1
  datalad: 1.1.3
  pandas: 2.2.2
  nibabel: 5.2.1
  ruamel.yaml: 0.17.40
  looseversion: None
system:
  platform: Linux-6.6.13+bpo-amd64-x86_64-with-glibc2.36
environment:
  PATH:
    /data/group/appliedml/tools/ants_2.5.0/binaries:/home/fraimondo/miniconda3/envs/junifer/bin:/home/fraimondo/miniconda3/condabin:/usr/local/bin:/usr/bin:/bin:/usr/games

Relevant log output

No response

Anything else?

Check this:

junifer/junifer/datagrabber/datalad_base.py

Lines 81 to 82 in 299b454

	tmpdir = Path(tempfile.mkdtemp())
	datadir = tmpdir / "datadir"