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BRT_Randomization.pyw
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BRT_Randomization.pyw
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import tkinter as tk
from tkinter import filedialog
from tkinter.filedialog import askdirectory
import random, win32com, win32api, numpy
from openpyxl import Workbook
from openpyxl import load_workbook
from openpyxl.styles import Style, PatternFill, Border, Side, Alignment, Protection, Font, Color
from openpyxl.worksheet import Worksheet, header_footer, page, worksheet
from openpyxl.writer.worksheet import write_worksheet
version = '0.9'
class Randomization(tk.Frame):
def __init__(self,master=None):
tk.Frame.__init__(self, master)
self.grid()
self.landingScreen()
def landingScreen(self):
self.button1 = tk.Button(self, text=u'New Rando', command=self.newStudyRando)
self.button1.grid(column=0, row=0, padx=50, pady=50, sticky='NSEW')
self.button2 = tk.Button(self, text=u'Outlier Check', command=self.outlierCheckType)
self.button2.grid(column=2, row=0, padx=35, pady=50, sticky='NSEW')
def newStudyRando(self):
wn = 372
hn = 190
root.geometry('%dx%d+%d+%d' % (wn, hn, x, y))
def selectDestination():
self.randoFilepath = tk.filedialog.askdirectory(initialdir='S:/Studies/BRT 2015 Studies', title='Select Study Folder')
self.randoFilepathLabel.config(text=self.randoFilepath)
self.button1.grid_forget()
self.button2.grid_forget()
self.randoFilepath = tk.StringVar()
self.randoFilepath = tk.filedialog.askdirectory(initialdir='S:/Studies/BRT 2015 Studies', title='Select Study Folder')
self.studyNumber = tk.StringVar()
self.entry1 = tk.Entry(self, textvariable=self.studyNumber)
self.entry1.grid(column=0, row=0, padx=8, pady=8, sticky='EW')
self.studyNumber.set(u'Enter Study Number')
self.entry1.focus()
self.entry1.select_range(0, tk.END)
self.startAnimalNum = tk.IntVar()
self.entry2 = tk.Entry(self, textvariable=self.startAnimalNum)
self.entry2.grid(column=0, row=1, padx=8, pady=8, sticky='EW')
self.startAnimalNum.set(u'Enter Starting Animal Number')
self.totalAnimals = tk.IntVar()
self.entry3 = tk.Entry(self, text=self.totalAnimals)
self.entry3.grid(column=0, row=2, padx=8, pady=8, sticky='EW')
self.totalAnimals.set(u'Enter Total Number of Animals')
self.v = tk.IntVar()
self.radio1 = tk.Radiobutton(self, text="Rats", variable=self.v, value=1)
self.radio1.grid(column=0, row=3, padx=8, pady=8, sticky='W')
self.radio2 = tk.Radiobutton(self, text="Mice", variable=self.v, value=2)
self.radio2.grid(column=0, row=3, padx=8, pady=8)
self.randoFilepathLabel = tk.Label(self, text=self.randoFilepath)
self.randoFilepathLabel.grid(column=0, row=4, padx=8, pady=8, sticky='EW')
button3 = tk.Button(self, text=u'Randomize!', command=self.onRandoClick)
button3.grid(column=1, row=2, padx= 10, sticky='NSEW')
button6 = tk.Button(self, text=u'Select Destination', command=selectDestination)
button6.grid(column=1, row=4, padx= 10, sticky='NSEW')
self.grid_columnconfigure((0), weight=1, minsize=250)
self.grid_columnconfigure((1), weight=1, minsize=125)
def onRandoClick(self):
##Init
anType = ''
if self.v == 1:
anType = 'Rat'
else:
anType = 'Mouse'
count = 0
data = []
header = ["%s #" % anType, "Weight (g)"]
endRow = self.totalAnimals.get() + 1
wtNumFormat = 'General'
if self.v == 1:
wtNumFormat = '0'
else:
wtNumFormat = '0.0'
headerStyle = Style(font=Font(bold=True),
border=Border(left=Side(border_style='thin',
color='FF000000'),
right=Side(border_style='thin',
color='FF000000'),
top=Side(border_style='thin',
color='FF000000'),
bottom=Side(border_style='thin',
color='FF000000'),
outline=Side(border_style='thin',
color='FF000000'),
vertical=Side(border_style='hair',
color='FF000000'),
horizontal=Side(border_style='hair',
color='FF000000')),
alignment=Alignment(horizontal='center',
vertical='center',
wrap_text=True))
numColumnStyle = Style(border=Border(left=Side(border_style='thin',
color='FF000000'),
right=Side(border_style='thin',
color='FF000000'),
top=Side(border_style='thin',
color='FF000000'),
bottom=Side(border_style='thin',
color='FF000000'),
outline=Side(border_style='thin',
color='FF000000'),
vertical=Side(border_style='hair',
color='FF000000'),
horizontal=Side(border_style='hair',
color='FF000000')),
alignment=Alignment(horizontal='center',
vertical='center'),
number_format='General',
protection=Protection(locked=True,
hidden='inherit'))
wtColumnStyle = Style(border=Border(left=Side(border_style='thin',
color='FF000000'),
right=Side(border_style='thin',
color='FF000000'),
top=Side(border_style='thin',
color='FF000000'),
bottom=Side(border_style='thin',
color='FF000000'),
outline=Side(border_style='thin',
color='FF000000'),
vertical=Side(border_style='hair',
color='FF000000'),
horizontal=Side(border_style='hair',
color='FF000000')),
alignment=Alignment(horizontal='center',
vertical='center'),
number_format=wtNumFormat,
protection=Protection(locked=True,
hidden='inherit'))
while count < self.totalAnimals.get():
data.append(self.startAnimalNum.get() + count)
count += 1
random.shuffle(data)
##Initialize workbook creation
wb = Workbook()
ws = wb.active
ws.title = '%s' % str(self.studyNumber.get())
wshf = ws.header_footer
wspm = ws.page_margins
##Column Headers
ws.cell('A1').value = header[0]
ws.cell('B1').value = header[1]
ws.cell('A1').style = headerStyle
ws.cell('B1').style = headerStyle
##Rando sign-off box
ws.merge_cells('E3:F7')
for row in ws.iter_rows('E3:F7'):
for cell in row:
cell.style = headerStyle
ws.cell('E3').value = 'Randomized using BRT Randomization v%s (Date/Initial) _________________' % version
ws.cell('E3').style = headerStyle
##Balance Info Box
ws.merge_cells('D10:G10')
ws.merge_cells('D11:E11')
ws.merge_cells('D12:E12')
ws.merge_cells('D13:E13')
ws.merge_cells('D14:E14')
ws.merge_cells('D15:E15')
ws.merge_cells('D16:E16')
ws.merge_cells('F11:G11')
ws.merge_cells('F12:G12')
ws.merge_cells('F13:G13')
ws.merge_cells('F14:G14')
ws.merge_cells('F15:G15')
ws.merge_cells('F16:G16')
for row in ws.iter_rows('D10:G16'):
for cell in row:
cell.style = headerStyle
ws.cell('D10').value = 'Balance Info'
ws.cell('D11').value = 'Balance Used'
ws.cell('D12').value = 'Serial Number'
ws.cell('D13').value = 'Calibrated'
ws.cell('D14').value = 'Verified Before'
ws.cell('D15').value = 'Verified After'
ws.cell('D16').value = 'Calibration Due'
##Write shuffled values to cells
j = 0
for i in range(2, self.totalAnimals.get() + 2):
ws.cell(row = i, column = 1).value = data[j]
j = j + 1
wb.create_named_range('data', ws, 'A2:B%s' % str(j + 1))
##Set styling for randomized data table
for row in ws.iter_rows('A2:A%r' % endRow):
for cell in row:
cell.style = numColumnStyle
for row in ws.iter_rows('B2:B%r' % endRow):
for cell in row:
cell.style = wtColumnStyle
##Add headers and footers
wshf.left_header.text = 'Date: _______________'
wshf.center_header.text = str(self.studyNumber.get()) + '\rRandomization'
wshf.right_header.text = 'Operator: ________________\r________________\r________________\r________________'
# wshf.left_footer.text = 'Randomized using BRT Randomization\rversion 1.0 \r(Date/Initial) _________________'
wshf.center_footer.text = 'Page &P of &N\r\r'
##Set print titles, margins, and column widths
ws.add_print_title(1, rows_or_cols='rows')
wspm.left = .75
wspm.right = .75
wspm.top = 1.2
wspm.bottom = 1.4
wspm.header = .5
wspm.footer = .5
ws.cell('C1').value = ''
ws.column_dimensions['C'].width = 8
ws.column_dimensions['D'].width = 11
ws.column_dimensions['E'].width = 11
ws.column_dimensions['F'].width = 11
ws.column_dimensions['G'].width = 11
##Enable sheet protection and save the file
# ws.protection.enable()
wb.save(self.randoFilepath + '//%s Rando.xlsx' % self.studyNumber.get())
win32api.MessageBox(0, 'Success!', '%s Randomization' % self.studyNumber.get())
root.destroy()
def outlierCheckType(self):
self.button1.grid_forget()
self.button2.grid_forget()
self.button4 = tk.Button(self, text=u'Mean \u00B1 20%', command=lambda: self.outlierCheck('Percent'))
self.button4.grid(column=0, row=0, padx=50, pady=50, sticky='NSEW')
self.button5 = tk.Button(self, text=u'Mean \u00B1 3 x StDev', command=lambda: self.outlierCheck('Range'))
self.button5.grid(column=1, row=0, padx=10, pady=50, sticky='NSEW')
def outlierCheck(self, ocType):
self.button4.grid_forget()
self.button5.grid_forget()
defaultStyle = Style(font=Font(name='Calibri',
size=11,
bold=False,
italic=False,
vertAlign=None,
underline='none',
strike=False,
color='FF000000'),
fill=PatternFill(fill_type=None,
start_color='FFFFFFFF',
end_color='FF000000'),
border=Border(left=Side(border_style=None,
color='FF000000'),
right=Side(border_style=None,
color='FF000000'),
top=Side(border_style=None,
color='FF000000'),
bottom=Side(border_style=None,
color='FF000000'),
diagonal=Side(border_style=None,
color='FF000000'),
diagonal_direction=0,
outline=Side(border_style=None,
color='FF000000'),
vertical=Side(border_style=None,
color='FF000000'),
horizontal=Side(border_style=None,
color='FF000000')),
alignment=Alignment(horizontal='general',
vertical='bottom',
text_rotation=0,
wrap_text=False,
shrink_to_fit=False,
indent=0),
number_format='General',
protection=Protection(locked='inherit',
hidden='inherit'))
headerStyle = Style(font=Font(bold=True),
border=Border(left=Side(border_style='thin',
color='FF000000'),
right=Side(border_style='thin',
color='FF000000'),
top=Side(border_style='thin',
color='FF000000'),
bottom=Side(border_style='thin',
color='FF000000'),
outline=Side(border_style='thin',
color='FF000000'),
vertical=Side(border_style='hair',
color='FF000000'),
horizontal=Side(border_style='hair',
color='FF000000')),
alignment=Alignment(horizontal='center',
vertical='center',
wrap_text=True))
file_path = ''
file_path = tk.filedialog.askopenfilename(initialdir='S:\\Studies\\', title='Select Rando File', parent=root)
animalNums = []
animalWts = []
onlyWts = []
outliers = {}
outlierAnNums = []
lowrange = int
highrange = int
roundPlaces = int
ocTypeString = str
anType = ''
wb = load_workbook(filename = file_path)
file_path = file_path[:-5] + ' Outlier Check.xlsx'
wb.save(file_path)
ws = wb.active
wshf = ws.header_footer
anType = ws.cell('A1').value.split(' ')
anType = anType[1]
if anType == 'Rat':
roundPlaces = 0
else:
roundPlaces = 1
data = wb.get_named_range('data').value
split = data.split('$') ##Create named range of data and get max row from that
maxDataRow = split[4]
for row in ws.iter_rows('A2:A%s' % maxDataRow):
for an in row: ##Need to skip rows without weights
animalNums.append(an.value)
for row in ws.iter_rows('B2:B%s' % maxDataRow):
for wt in row:
animalWts.append(wt.value)
onlyWts = [x for x in animalWts if x != None]
dataDict = dict(zip(animalNums, animalWts))
wtsFirstDict = dict(zip(animalWts, animalNums))
print(ws.cell('B2').value)
totAnimals = int(maxDataRow) - 1
wtMean = round(numpy.mean(onlyWts), roundPlaces)
wtStdev = round(numpy.std(onlyWts), roundPlaces)
plus20pct = round(wtMean * 1.2, roundPlaces)
minus20pct = round(wtMean * 0.8, roundPlaces)
plus3std = round(wtMean + 3 * wtStdev, roundPlaces)
minus3std = round(wtMean - 3 * wtStdev, roundPlaces)
if ocType == 'Percent':
highrange = plus20pct
lowrange = minus20pct
ocTypeString = u'Mean \u00B1 20%'
for anNum, anWt in dataDict.items():
if anWt == None:
continue
elif (anWt < minus20pct) or (anWt > plus20pct):
outliers[anNum] = anWt
if ocType == 'Range':
highrange = plus3std
lowrange = minus3std
ocTypeString = u'Mean \u00B1 3xStDev'
for anNum, anWt in dataDict.items():
if anWt == None:
continue
elif (anWt < minus3std) or (anWt > plus3std):
outliers[anNum] = anWt
if len(outliers) == 0:
outlierAnNums = []
else:
for b in outliers:
outlierAnNums.append(str(b))
if len(outlierAnNums) == 0:
outlierStatement = 'There are no weight outliers'
elif len(outlierAnNums) == 1:
outlierStatement = 'Animal number %s is a weight outlier' % ', '.join(outlierAnNums)
else:
outlierStatement = 'Animal numbers %s are weight outliers' % ', '.join(outlierAnNums)
ws.unmerge_cells('E3:F7')
ws.unmerge_cells('D15:E15')
ws.unmerge_cells('D16:E16')
ws.unmerge_cells('F15:G15')
ws.unmerge_cells('F16:G16')
wshf.left_header.text = ''
wshf.center_header.text = str(ws.title) + '\rOutlier Check'
wshf.right_header.text = ''
for row in ws.iter_rows('E3:F7'):
for cell in row:
cell.style = defaultStyle
ws.cell('E3').value = ''
ws.cell('E3').style = defaultStyle
ws.cell('D10').value = 'Outlier Check (%s)' %ocTypeString
ws.cell('D11').value = 'n: '
ws.cell('D12').value = 'Mean:'
ws.cell('D13').value = 'Std Dev:'
ws.cell('D14').value = 'Range:'
ws.cell('D15').value = outlierStatement
ws.cell('F11').value = totAnimals
ws.cell('F12').value = '%s g' % str(wtMean)
ws.cell('F13').value = '%s g' % str(wtStdev)
ws.cell('F14').value = '%s g --> %s g' % (str(lowrange), str(highrange))
ws.merge_cells('D15:G16')
for row in ws.iter_rows('D10:G16'):
for cell in row:
cell.style = headerStyle
wb.save(file_path)
win32api.MessageBox(0, 'Success!', '%s Outlier Check' % ws.title)
root.destroy()
if __name__ == '__main__':
root = tk.Tk()
root.title('BRT Randomization v%s' % version)
#make my screen dimensions work
w = 340 #The value of the width
h = 130 #The value of the height of the window
# get screen width and height
ws = root.winfo_screenwidth()#This value is the width of the screen
hs = root.winfo_screenheight()#This is the height of the screen
# calculate position x, y
x = (ws/2) - (w/2)
y = (hs/2) - (h/2)
#This is responsible for setting the dimensions of the screen and where it is
#placed
root.geometry('%dx%d+%d+%d' % (w, h, x, y))
app = Randomization(master=root)
app.mainloop()