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fail gracefully when viridian correctly fails to assemble #5

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jeff-k opened this issue Jun 1, 2021 · 2 comments
Open

fail gracefully when viridian correctly fails to assemble #5

jeff-k opened this issue Jun 1, 2021 · 2 comments

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@jeff-k
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jeff-k commented Jun 1, 2021

Currently it exit(1)s after a viridian consensus doesn't get created because of poor sample quality. It should exit successfully with a clear indication that the pipeline failed.
@martinghunt martinghunt mentioned this issue Nov 22, 2021
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@iqbal-lab
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this open @martinghunt ?

@martinghunt
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yes (although is prob covered by fixing #19)

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@jeff-k @martinghunt @iqbal-lab