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remove cortex MISMAPPED_UNPLACEABLE VCF records #46

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martinghunt opened this issue May 15, 2018 · 1 comment
Open

remove cortex MISMAPPED_UNPLACEABLE VCF records #46

martinghunt opened this issue May 15, 2018 · 1 comment

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@martinghunt
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martinghunt commented May 15, 2018 •
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In rare cases, cortex has the filter column as "MISMAPPED_UNPLACEABLE". These are getting through into minos results. Filter these VCF records out right at the start of a minos run because they should not be used.
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Only keep Pass cortex calls

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@martinghunt @iqbal-lab