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N E X T F L O W ~ version 20.10.0
Launching /home/carolyn/clockwork/nextflow/remove_contam.nf [lonely_church] - revision: b2f84f8ad4
executor > local (1)
[9d/405c46] process > make_jobs_tsv [ 0%] 0 of 1
[- ] process > map_reads -
[- ] process > sam_to_fastq_files -
executor > local (1)
[9d/405c46] process > make_jobs_tsv [100%] 1 of 1, failed: 1 ✘
[- ] process > map_reads -
[- ] process > sam_to_fastq_files -
Error executing process > 'make_jobs_tsv'
Caused by:
Process make_jobs_tsv terminated with an error exit status (1)
Command error:
/bin/bash: line 0: cd: /media/carolyn/8T/fastq_rmcontam_clockwork/work/9d/405c46ed86f696e8fc74ab97c6cde7: No such file or directory
/bin/bash: .command.sh: No such file or directory
Work dir:
/media/carolyn/8T/fastq_rmcontam_clockwork/work/9d/405c46ed86f696e8fc74ab97c6cde7
Tip: you can replicate the issue by changing to the process work dir and entering the command bash .command.run
The messages says "/media/carolyn/8T/fastq_rmcontam_clockwork/work/9d/405c46ed86f696e8fc74ab97c6cde7: No such file or directory' , but the directory is there. I'm not sure whether this is the problem or something else went wrong. Any idea?
The text was updated successfully, but these errors were encountered:
Hi,
I'm trying to remove contamination using the following commands:
and got the error message:
The messages says "/media/carolyn/8T/fastq_rmcontam_clockwork/work/9d/405c46ed86f696e8fc74ab97c6cde7: No such file or directory' , but the directory is there. I'm not sure whether this is the problem or something else went wrong. Any idea?
The text was updated successfully, but these errors were encountered: