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Add a final report #75

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iqbal-lab opened this issue Jun 17, 2020 · 0 comments
Open

Add a final report #75

iqbal-lab opened this issue Jun 17, 2020 · 0 comments
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enhancement New feature or request

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@iqbal-lab
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Some stats we could add, requested in our WHO/UNITAID call

  1. output a warning if any resistance gene has <99% of the gene at >5x depth
  2. warn if <95% of the genome has >5x depth

Summarise QC, Mykrobe, variant calling.

@iqbal-lab iqbal-lab added the enhancement New feature or request label Jun 17, 2020
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