From 8e0010dce95917a40bf88226a98a5d8a6dee665e Mon Sep 17 00:00:00 2001 From: Stefan Verhoeven Date: Tue, 8 Oct 2024 16:21:32 +0200 Subject: [PATCH 1/5] Dont close a connection that is not there --- src/bartender/schedulers/arq.py | 22 +++++++++++----------- 1 file changed, 11 insertions(+), 11 deletions(-) diff --git a/src/bartender/schedulers/arq.py b/src/bartender/schedulers/arq.py index f6a4f11..fcb4b61 100644 --- a/src/bartender/schedulers/arq.py +++ b/src/bartender/schedulers/arq.py @@ -35,9 +35,9 @@ class ArqSchedulerConfig(BaseModel): type: Literal["arq"] = "arq" redis_dsn: RedisDsn = parse_obj_as(RedisDsn, "redis://localhost:6379") queue: str = "arq:queue" - max_jobs: PositiveInt = 10 # noqa: WPS462 - """Maximum number of jobs to run at a time inside a single worker.""" # noqa: E501, WPS322, WPS428 - job_timeout: Union[PositiveInt, timedelta] = 3600 # noqa: WPS462 + max_jobs: PositiveInt = 10 + """Maximum number of jobs to run at a time inside a single worker.""" + job_timeout: Union[PositiveInt, timedelta] = 3600 """Maximum job run time. Default is one hour. @@ -45,7 +45,7 @@ class ArqSchedulerConfig(BaseModel): In seconds or string in `ISO 8601 duration format `_. For example, "PT12H" represents a max runtime of "twelve hours". - """ # noqa: E501, WPS428 + """ @property def redis_settings(self) -> RedisSettings: @@ -72,11 +72,11 @@ def __init__(self, config: ArqSchedulerConfig) -> None: self.config: ArqSchedulerConfig = config self.connection: Optional[ArqRedis] = None - async def close(self) -> None: # noqa: D102 - pool = await self._pool() - await pool.close() + async def close(self) -> None: + if self.connection is not None: + await self.connection.close() - async def submit(self, description: JobDescription) -> str: # noqa: D102 + async def submit(self, description: JobDescription) -> str: pool = await self._pool() job = await pool.enqueue_job("_exec", description) if job is None: @@ -84,7 +84,7 @@ async def submit(self, description: JobDescription) -> str: # noqa: D102 raise RuntimeError("Job already exists") return job.job_id - async def state(self, job_id: str) -> State: # noqa: D102 + async def state(self, job_id: str) -> State: pool = await self._pool() job = Job(job_id, pool) arq_status = await job.status() @@ -100,7 +100,7 @@ async def state(self, job_id: str) -> State: # noqa: D102 success = result.success return _map_arq_status(arq_status, success) - async def cancel(self, job_id: str) -> None: # noqa: D102 + async def cancel(self, job_id: str) -> None: pool = await self._pool() job = Job(job_id, pool) try: @@ -129,7 +129,7 @@ class JobFailureError(Exception): """Error during job running.""" -async def _exec( # noqa: WPS210 +async def _exec( ctx: dict[Any, Any], description: JobDescription, ) -> None: From 708e46e97f96977cc4302b13b76456275c6eec2d Mon Sep 17 00:00:00 2001 From: Stefan Verhoeven Date: Wed, 9 Oct 2024 10:00:02 +0200 Subject: [PATCH 2/5] Make flake8 work with Python 3.12 --- poetry.lock | 784 +++++++++++++++++------------- pyproject.toml | 7 +- src/bartender/schedulers/arq.py | 21 +- src/bartender/schedulers/dirac.py | 2 +- 4 files changed, 457 insertions(+), 357 deletions(-) diff --git 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= ["hiredis"], version ="5.0.8"} [tool.poetry.group.dev.dependencies] pytest = "^7.0" -flake8 = "^4.0.1" +flake8 = "^7.1.1" mypy = "^1.1.1" isort = "^5.10.1" yesqa = "^1.3.0" pre-commit = "^2.19.0" -wemake-python-styleguide = "^0.16.1" +# released version not python 3.12 compatible due to flake8-commas, use git version +wemake-python-styleguide = {git = "https://github.com/wemake-services/wemake-python-styleguide.git", rev = "56121b39a190c0a0fb575f4066cd8bafddfe2211"} black = "^22.3.0" autoflake = "^1.4" pytest-cov = "^3.0.0" diff --git a/src/bartender/schedulers/arq.py b/src/bartender/schedulers/arq.py index fcb4b61..1c5e727 100644 --- a/src/bartender/schedulers/arq.py +++ b/src/bartender/schedulers/arq.py @@ -35,17 +35,18 @@ class ArqSchedulerConfig(BaseModel): type: Literal["arq"] = "arq" redis_dsn: RedisDsn = parse_obj_as(RedisDsn, "redis://localhost:6379") queue: str = "arq:queue" - max_jobs: PositiveInt = 10 - """Maximum number of jobs to run at a time inside a single worker.""" - job_timeout: Union[PositiveInt, timedelta] = 3600 + max_jobs: PositiveInt = 10 # noqa: WPS462 + """Maximum number of jobs to run at a time inside a single worker.""" # noqa: E501, WPS322, WPS428 + job_timeout: Union[PositiveInt, timedelta] = 3600 # noqa: WPS462 """Maximum job run time. Default is one hour. - In seconds or string in `ISO 8601 duration format `_. + In seconds or string in + `ISO 8601 duration format `_. For example, "PT12H" represents a max runtime of "twelve hours". - """ + """ # noqa: WPS428 @property def redis_settings(self) -> RedisSettings: @@ -72,11 +73,11 @@ def __init__(self, config: ArqSchedulerConfig) -> None: self.config: ArqSchedulerConfig = config self.connection: Optional[ArqRedis] = None - async def close(self) -> None: + async def close(self) -> None: # noqa: D102 if self.connection is not None: await self.connection.close() - async def submit(self, description: JobDescription) -> str: + async def submit(self, description: JobDescription) -> str: # noqa: D102 pool = await self._pool() job = await pool.enqueue_job("_exec", description) if job is None: @@ -84,7 +85,7 @@ async def submit(self, description: JobDescription) -> str: raise RuntimeError("Job already exists") return job.job_id - async def state(self, job_id: str) -> State: + async def state(self, job_id: str) -> State: # noqa: D102 pool = await self._pool() job = Job(job_id, pool) arq_status = await job.status() @@ -100,7 +101,7 @@ async def state(self, job_id: str) -> State: success = result.success return _map_arq_status(arq_status, success) - async def cancel(self, job_id: str) -> None: + async def cancel(self, job_id: str) -> None: # noqa: D102 pool = await self._pool() job = Job(job_id, pool) try: @@ -129,7 +130,7 @@ class JobFailureError(Exception): """Error during job running.""" -async def _exec( +async def _exec( # noqa: WPS210 ctx: dict[Any, Any], description: JobDescription, ) -> None: diff --git a/src/bartender/schedulers/dirac.py b/src/bartender/schedulers/dirac.py index 6fcc5cc..02c2ade 100644 --- a/src/bartender/schedulers/dirac.py +++ b/src/bartender/schedulers/dirac.py @@ -298,7 +298,7 @@ async def _jdl_script(self, description: JobDescription, scriptdir: Path) -> str StdOutput = "jobstdout.txt"; StdError = "jobstderr.txt"; OutputSandbox = {{ "jobstdout.txt", "jobstderr.txt" }}; - """, # noqa: E501, WPS237 + """, # noqa: E501, WPS237, WPS318 ) From e1a5f578b6691aaf12dca2b3e9d9f675ab9125fe Mon Sep 17 00:00:00 2001 From: Stefan Verhoeven Date: Wed, 9 Oct 2024 10:04:20 +0200 Subject: [PATCH 3/5] Fix flake8 issue --- tests_dirac/test_renewer.py | 1 - 1 file changed, 1 deletion(-) diff --git a/tests_dirac/test_renewer.py b/tests_dirac/test_renewer.py index b43519a..579acd4 100644 --- a/tests_dirac/test_renewer.py +++ b/tests_dirac/test_renewer.py @@ -66,7 +66,6 @@ async def test_make_valid_dirac_proxy_given_bad_cert(tmp_path: Path) -> None: @pytest.mark.anyio async def test_renewer_setup_teardown() -> None: setup_proxy_renewer(ProxyConfig(valid="00:03", min_life=30)) - # Give renewer task time to run await asyncio.sleep(0.1) From cf6dfeac921499bd5cc645c44c40d3f7a3661faf Mon Sep 17 00:00:00 2001 From: Stefan Verhoeven Date: Wed, 9 Oct 2024 10:35:12 +0200 Subject: [PATCH 4/5] Make instructions work --- README.md | 14 ++++++++------ 1 file changed, 8 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index 4b059eb..75602aa 100644 --- a/README.md +++ b/README.md @@ -35,16 +35,18 @@ at . ## Quickstart -1. Install bartender via github: +1. Install bartender via GitHub: ```bash - pip install git+https://github.com/i-VRESSE/bartender.git + # Inside an empty directory + git clone https://github.com/i-VRESSE/bartender.git . + pip install . ``` 1. Obtain a copy of the example configuration file ```bash - curl -o config.yaml https://raw.githubusercontent.com/i-VRESSE/bartender/main/config-example.yaml + cp config-example.yaml config.yaml ``` 1. In another terminal, start up a database for storing jobs. @@ -109,8 +111,8 @@ Bartender is by default configured with a word count applicaton. Use the following steps to run a job: 1. Create an archive to submit. The zip file should contain a file called - `README.md`. A zip file could be created in a clone of this repo with `zip - README.zip README.md`. + `README.md`. A zip file could be created in a clone of this repo with + `zip README.zip README.md`. 2. Start [bartender web service and postgresql server](https://i-vresse-bartender.readthedocs.io/en/latest/index.html#quickstart) 3. Generate token & authorize @@ -123,7 +125,7 @@ following steps to run a job: 4. Try out the `GET /api/whoami` route. It should return JSON document with `someone` as username. 4. Submit archive. - 1. Try out the `PUT /api/application/wc/job` route. + 1. Try out the `PUT /api/application/wc` route. 2. Upload the `README.zip` as request body. 3. Press execute button 4. The response contains a job identifier (`id` property) that can be used From 71bdbfe4f21021db2430dc86626ff885041d8312 Mon Sep 17 00:00:00 2001 From: Stefan Verhoeven Date: Wed, 9 Oct 2024 12:52:07 +0200 Subject: [PATCH 5/5] Make dirac tests pass + use poetry 1.8.3 --- .github/workflows/dirac.yml | 1 + .pre-commit-config.yaml | 2 +- deploy/Dockerfile | 2 +- deploy/Dockerfile.dirac | 2 +- docs/configuration.md | 2 +- docs/develop.md | 2 +- pyproject.toml | 2 +- tests_dirac/Dockerfile | 8 +++++--- tests_dirac/docker-compose.yml | 4 +--- tests_dirac/test_it.py | 13 +++++++++++++ 10 files changed, 26 insertions(+), 12 deletions(-) diff --git a/.github/workflows/dirac.yml b/.github/workflows/dirac.yml index 416ce80..1d2646e 100644 --- a/.github/workflows/dirac.yml +++ b/.github/workflows/dirac.yml @@ -5,6 +5,7 @@ on: # Run tests only if dirac code is changed or workflow is triggerd manually paths: - '**dirac**' + - .github/workflows/dirac.yml workflow_dispatch: jobs: diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 69d9b04..e9cf374 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -15,7 +15,7 @@ repos: - id: add-trailing-comma - repo: https://github.com/macisamuele/language-formatters-pre-commit-hooks - rev: v2.1.0 + rev: v2.14.0 hooks: - id: pretty-format-yaml args: diff --git a/deploy/Dockerfile b/deploy/Dockerfile index 06a8e69..446b385 100644 --- a/deploy/Dockerfile +++ b/deploy/Dockerfile @@ -3,7 +3,7 @@ FROM python:3.10-slim-buster # Install healthcheck dependency RUN apt update && apt install -y curl unzip -RUN pip install poetry==1.7.0 +RUN pip install poetry==1.8.3 # Configuring poetry RUN poetry config virtualenvs.create false diff --git a/deploy/Dockerfile.dirac b/deploy/Dockerfile.dirac index 87e18ec..1d5b463 100644 --- a/deploy/Dockerfile.dirac +++ b/deploy/Dockerfile.dirac @@ -8,7 +8,7 @@ RUN apt install -y unzip USER diracuser -RUN pip install poetry==1.4.2 +RUN pip install poetry==1.8.3 # Configuring poetry RUN poetry config virtualenvs.create false diff --git a/docs/configuration.md b/docs/configuration.md index d5bd173..6cd07ee 100644 --- a/docs/configuration.md +++ b/docs/configuration.md @@ -340,7 +340,7 @@ If you need [DIRAC](http://diracgrid.org/) support create a conda environment instead of creating a virtual environment. ```bash -mamba create --name bartender dirac-grid python=3.10 poetry=1.5.1 +mamba create --name bartender dirac-grid python=3.10 poetry=1.8.3 conda activate bartender poetry install ``` diff --git a/docs/develop.md b/docs/develop.md index 3c11f34..b8ae6b2 100644 --- a/docs/develop.md +++ b/docs/develop.md @@ -203,7 +203,7 @@ the `WorkloadManagement_SiteDirector` service starting a pilot. To look around inside the DIRAC server use ```shell -docker-compose -f tests_dirac/docker-compose.yml exec dirac-tuto bash +docker compose -f tests_dirac/docker-compose.yml exec dirac-tuto bash ``` Sometimes the DIRAC server needs clearing of its state, diff --git a/pyproject.toml b/pyproject.toml index 9a44fed..36aff72 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -100,5 +100,5 @@ env = [ ] [build-system] -requires = ["poetry-core>=1.5.2"] +requires = ["poetry-core>=1.8.3"] build-backend = "poetry.core.masonry.api" diff --git a/tests_dirac/Dockerfile b/tests_dirac/Dockerfile index da1db05..5a4c2b4 100644 --- a/tests_dirac/Dockerfile +++ b/tests_dirac/Dockerfile @@ -1,7 +1,7 @@ -FROM ghcr.io/xenon-middleware/diracclient:8.0.39 +FROM ghcr.io/xenon-middleware/diracclient:8.0.49 RUN pip install --upgrade pip wheel setuptools && \ - pip install poetry==1.7.0 + pip install poetry==1.8.3 # Configuring poetry RUN poetry config virtualenvs.create false @@ -12,7 +12,9 @@ WORKDIR /workspace COPY pyproject.toml poetry.lock ./ # Installing requirements -RUN poetry install --no-root --no-interaction --no-ansi --with dev +RUN poetry install --no-root --no-interaction --no-ansi --without dev + +RUN pip install pytest anyio pytest-env # Workaround `ImportWarning: _SixMetaPathImporter.find_spec() not found; falling back to find_module()` error RUN /home/diracuser/diracos/bin/micromamba install m2crypto==0.041.0 diff --git a/tests_dirac/docker-compose.yml b/tests_dirac/docker-compose.yml index e502b1f..e215270 100644 --- a/tests_dirac/docker-compose.yml +++ b/tests_dirac/docker-compose.yml @@ -1,8 +1,6 @@ -version: '3.9' - services: dirac-tuto: - image: ghcr.io/xenon-middleware/dirac:8.0.39 + image: ghcr.io/xenon-middleware/dirac:8.0.49 privileged: true hostname: dirac-tuto test: diff --git a/tests_dirac/test_it.py b/tests_dirac/test_it.py index bc20c73..db3d276 100644 --- a/tests_dirac/test_it.py +++ b/tests_dirac/test_it.py @@ -127,7 +127,20 @@ async def apptainer_image() -> Path: return image +# Skip test +# su - diracpilot +# . /opt/dirac/bashrc +# apptainer run docker://alpine cat /etc/os-release +# Gives +# ERROR [U=65534,P=5871] setup_userns_mappings() +# Could not write info to setgroups: Permission denied +# ERROR [U=65534,P=5892] init() +# Error while waiting event for user namespace mappings: no event received +# image does not run bashrc or has apptainer suid installed @pytest.mark.anyio +@pytest.mark.skip( + reason="diracpilot user in DIRAC server container does not have permission to run apptainer", # noqa: E501 +) async def test_it_with_apptainer( # noqa: WPS217 single piece of code for readablilty apptainer_image: Path, tmp_path: Path,