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run.sh
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run.sh
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#!/bin/bash
JOBS=40
JOBS_FC=8
# static
for model in LR RF LASSO SVC GB; do
for data in FC REHO ALFF fALFF; do
python ~/schizo_fmri/static_approach.py --jobs $JOBS --model $model --include $data -- /mnt/users/bwojcik/local/schizo_fmri/STATIC /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/static_results
python ~/schizo_fmri/static_approach.py --jobs $JOBS --model $model --pca --include $data -- /mnt/users/bwojcik/local/schizo_fmri/STATIC /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/static_results
done
python ~/schizo_fmri/static_approach.py --jobs $JOBS --model $model --include FC REHO ALFF fALFF -- /mnt/users/bwojcik/local/schizo_fmri/STATIC /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/static_results
python ~/schizo_fmri/static_approach.py --jobs $JOBS --model $model --pca --include FC REHO ALFF fALFF -- /mnt/users/bwojcik/local/schizo_fmri/STATIC /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/static_results
done
# static 116
for model in LR RF LASSO SVC GB; do
for data in FC REHO ALFF fALFF; do
python ~/schizo_fmri/static_approach.py --jobs $JOBS --model $model --include $data -- /mnt/users/bwojcik/local/schizo_fmri/STATIC_116 /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/static_116_results
python ~/schizo_fmri/static_approach.py --jobs $JOBS --model $model --pca --include $data -- /mnt/users/bwojcik/local/schizo_fmri/STATIC_116 /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/static_116_results
done
python ~/schizo_fmri/static_approach.py --jobs $JOBS --model $model --include FC REHO ALFF fALFF -- /mnt/users/bwojcik/local/schizo_fmri/STATIC_116 /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/static_116_results
python ~/schizo_fmri/static_approach.py --jobs $JOBS --model $model --pca --include FC REHO ALFF fALFF -- /mnt/users/bwojcik/local/schizo_fmri/STATIC_116 /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/static_116_results
done
# dynamic
# for model in LR RF LASSO SVC GB; do
# python ~/schizo_fmri/dynamic_approach.py --jobs $JOBS --model $model --include REHO ALFF fALFF -- /mnt/users/bwojcik/local/schizo_fmri/DYNAMIC /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/dynamic_results
# python ~/schizo_fmri/dynamic_approach.py --jobs $JOBS --model $model --pca --include REHO ALFF fALFF -- /mnt/users/bwojcik/local/schizo_fmri/DYNAMIC /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/dynamic_results
# for data in REHO ALFF fALFF; do
# python ~/schizo_fmri/dynamic_approach.py --jobs $JOBS --model $model --include $data -- /mnt/users/bwojcik/local/schizo_fmri/DYNAMIC /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/dynamic_results
# python ~/schizo_fmri/dynamic_approach.py --jobs $JOBS --model $model --pca --include $data -- /mnt/users/bwojcik/local/schizo_fmri/DYNAMIC /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/dynamic_results
# done
# done
# dynamic FC with PCA
# for model in LR RF; do
# python ~/schizo_fmri/dynamic_approach.py --jobs $JOBS_FC --model $model --pca --include FC -- /mnt/users/bwojcik/local/schizo_fmri/DYNAMIC /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/dynamic_results
# python ~/schizo_fmri/dynamic_approach.py --jobs $JOBS_FC --model $model --pca --include FC REHO ALFF fALFF -- /mnt/users/bwojcik/local/schizo_fmri/DYNAMIC /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/dynamic_results
# done
# dynamic 116
# for model in LR RF LASSO SVC GB; do
# python ~/schizo_fmri/dynamic_approach.py --jobs $JOBS --model $model --include REHO ALFF fALFF -- /mnt/users/bwojcik/local/schizo_fmri/DYNAMIC_116 /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/dynamic_116_results
# python ~/schizo_fmri/dynamic_approach.py --jobs $JOBS --model $model --pca --include REHO ALFF fALFF -- /mnt/users/bwojcik/local/schizo_fmri/DYNAMIC_116 /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/dynamic_116_results
# for data in REHO ALFF fALFF; do
# python ~/schizo_fmri/dynamic_approach.py --jobs $JOBS --model $model --include $data -- /mnt/users/bwojcik/local/schizo_fmri/DYNAMIC_116 /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/dynamic_116_results
# python ~/schizo_fmri/dynamic_approach.py --jobs $JOBS --model $model --pca --include $data -- /mnt/users/bwojcik/local/schizo_fmri/DYNAMIC_116 /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/dynamic_116_results
# done
# done
# dynamic 116 FC with PCA
# for model in LR RF; do
# python ~/schizo_fmri/dynamic_approach.py --jobs $JOBS_FC --model $model --pca --include FC -- /mnt/users/bwojcik/local/schizo_fmri/DYNAMIC_116 /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/dynamic_116_results
# python ~/schizo_fmri/dynamic_approach.py --jobs $JOBS_FC --model $model --pca --include FC REHO ALFF fALFF -- /mnt/users/bwojcik/local/schizo_fmri/DYNAMIC_116 /mnt/users/bwojcik/local/schizo_fmri/Demographics_questionnaires.csv /mnt/users/bwojcik/local/schizo_fmri/dynamic_116_results
# done