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Makefile_dataQuality
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Makefile_dataQuality
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################################################################################
# (C) 2016 Tyler W. H. Backman
# Tables and figures for Bioactivity Data Curation and Overview
# and Data Quality and Reproducibility sections
################################################################################
# Tabulate the distribution of number of times screened for each compound in the
# database? Drugs vs non-drugs.
# also generates: working/timesScreened.pdf working/timesScreened.RData
working/timesScreened.csv: src/timesScreened.R $(databaseFile) working/drugbank_links.csv
$^ $@
# build sparse matrix of compounds vs targets where counts represent
# number of times each pair was replicated
working/replicateMatrix.RData: src/replicateMatrix.R $(databaseFile)
$^ $@ $(cores)
# build table of replicate count distribution
working/replicateTable.csv: src/replicateTable.R working/replicateMatrix.RData
$^ $@
# extract replicates and investigate one at a time- and output counts
working/replicateStats.RData: src/replicateStats.R working/replicateMatrix.RData $(databaseFile)
$^ $@ $(cores)