Mapping GO terms to descriptions and vice versa

[Ruiqi-CUB]

Hi all!

I have a list of GO terms and I would like to find the description of them. Is there a software or package that I can use? Also, how can I find the GO terms based on its description?

There are over 1000 GO terms in my list. I don't think I should do it manually on http://geneontology.org/

Thanks a lot!!

My GO list looks like this: [one GO term per line]

GO:0001505
GO:0006259
GO:0006403 ...

Ideal Output: (tab delimited)
GO:0001505 regulation of neurotransmitter levels
GO:0001824 blastocyst development
GO:0002181 cytoplasmic translation

Thanks a lot

Ruiqi

[suzialeksander]

For this, any up-to-date InterMine will work- here's an example with YeastMine, which prominently displays the GO version. For a list of your size, upload the list (don't enter/paste them in).

You can use the YeastMine Analyze tool available at SGD to retrieve the GO term names for each ID.

• Go to the Analyze tool on YeastMine
• In the Select Type pull down, select GO Term
• Enter your GO ids or upload a list in the full format (GO:0016020, GO:0016301…)
• Click on Create List. The tool offers several options to download the list.

http://geneontology.org/docs/faq/#how-do-i-get-the-term-names-for-my-list-of-go-ids

[Ruiqi-CUB]

Thank you so much! How about vice versa?

[Ruiqi-CUB]

Thank you so much! How about vice versa?

…

On Mon, Feb 27, 2023 at 1:31 PM suzialeksander ***@***.***> wrote: For this, any up-to-date InterMine will work- here's an example with YeastMine, which prominently displays the GO version. You can use the YeastMine Analyze tool available at SGD to retrieve the GO term names for each ID. - Go to the Analyze tool on YeastMine <http://yeastmine.yeastgenome.org/yeastmine/bag.do> - In the Select Type pull down, select GO Term - Enter your GO ids or upload a list in the full format (GO:0016020, GO:0016301…) - Click on Create List. The tool offers several options to download the list. http://geneontology.org/docs/faq/#how-do-i-get-the-term-names-for-my-list-of-go-ids — Reply to this email directly, view it on GitHub <#430 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ALEILIVC5BKBYTW4WMCGZWDWZUFJRANCNFSM6AAAAAAVJYLSOA> . You are receiving this because you authored the thread.Message ID: ***@***.***>

[suzialeksander]

https://yeastmine.yeastgenome.org/yeastmine/template.do?name=GOname_GOidentifier&scope=all