From 904f717f4256aa694bb7beb7ece79f246109c5a8 Mon Sep 17 00:00:00 2001 From: Chris Mungall Date: Thu, 1 Apr 2021 08:40:59 -0700 Subject: [PATCH 1/2] Update goref-0000116.md Always use standard URLs.. maybe should use PURLs? --- metadata/gorefs/goref-0000116.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/metadata/gorefs/goref-0000116.md b/metadata/gorefs/goref-0000116.md index 71f8b887..93ce1150 100644 --- a/metadata/gorefs/goref-0000116.md +++ b/metadata/gorefs/goref-0000116.md @@ -8,4 +8,4 @@ layout: goref ## Automatic Gene Ontology annotation based on Rhea mapping. -Rhea (https://www.rhea-db.org/, PMID:30272209) is an expert-curated knowledgebase of chemical and transport reactions of biological interest - and the standard for enzyme and transporter annotation in UniProtKB (PMID:31688925). Rhea uses the chemical dictionary ChEBI (Chemical Entities of Biological Interest) to describe reaction participants and their chemical transformations in a computationally tractable manner. GO terms corresponding to Rhea reactions are assigned a Rhea database cross-reference. The corresponding GO term is automatically applied to all UniProt entries annotated with a Rhea reaction. The mapping file is available at: http://current.geneontology.org/ontology/external2go/rhea2go. +Rhea (https://www.rhea-db.org/, PMID:30272209) is an expert-curated knowledgebase of chemical and transport reactions of biological interest - and the standard for enzyme and transporter annotation in UniProtKB (PMID:31688925). Rhea uses the chemical dictionary ChEBI (Chemical Entities of Biological Interest) to describe reaction participants and their chemical transformations in a computationally tractable manner. GO terms corresponding to Rhea reactions are assigned a Rhea database cross-reference. The corresponding GO term is automatically applied to all UniProt entries annotated with a Rhea reaction. The mapping file is available at: http://geneontology.org/external2go/ontology/external2go/rhea2go. From c22a76e3277a34f6bd16ebd541092dbd583c972c Mon Sep 17 00:00:00 2001 From: cmungall Date: Thu, 1 Apr 2021 15:41:29 +0000 Subject: [PATCH 2/2] refreshing goref and rules README.md files --- metadata/gorefs/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/metadata/gorefs/README.md b/metadata/gorefs/README.md index c879b7bd..ebf3a8b3 100644 --- a/metadata/gorefs/README.md +++ b/metadata/gorefs/README.md @@ -1537,4 +1537,4 @@ or for further information, please visit the RNAcentral website at http://rnacen -Rhea (https://www.rhea-db.org/, PMID:30272209) is an expert-curated knowledgebase of chemical and transport reactions of biological interest - and the standard for enzyme and transporter annotation in UniProtKB (PMID:31688925). Rhea uses the chemical dictionary ChEBI (Chemical Entities of Biological Interest) to describe reaction participants and their chemical transformations in a computationally tractable manner. GO terms corresponding to Rhea reactions are assigned a Rhea database cross-reference. The corresponding GO term is automatically applied to all UniProt entries annotated with a Rhea reaction. The mapping file is available at: http://current.geneontology.org/ontology/external2go/rhea2go. +Rhea (https://www.rhea-db.org/, PMID:30272209) is an expert-curated knowledgebase of chemical and transport reactions of biological interest - and the standard for enzyme and transporter annotation in UniProtKB (PMID:31688925). Rhea uses the chemical dictionary ChEBI (Chemical Entities of Biological Interest) to describe reaction participants and their chemical transformations in a computationally tractable manner. GO terms corresponding to Rhea reactions are assigned a Rhea database cross-reference. The corresponding GO term is automatically applied to all UniProt entries annotated with a Rhea reaction. The mapping file is available at: http://geneontology.org/external2go/ontology/external2go/rhea2go.