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Tool update: featureCounts #6445
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Have you set the dbkey of your BAM files (to mm10)? https://training.galaxyproject.org/training-material/faqs/galaxy/datasets_change_dbkey.html Would be interesting to know if setting or changes anything. |
The mm10 is already specified as db: https://usegalaxy.eu/u/teresa-m/h/copy-of-rna-seq-reads-to-counts |
Hi All,
today while running the following GTN tutorial, we discovered a not user-friendly behavior of how FeatureCounts allows users to use the build in references.
The tutorial asks to:
Alignment file
-> a BAM collectionGene annotation file
should be set to ->featureCounts built-in
optionmm10
should be selected.However, this was not possible:
But:
Gene annotation file
to ->featureCounts built-in
first,It was possible to select the reference genome.
Could someone have a look here? Thanks a lot!
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