INSTALL

This file is to help you build and install pIRS for your system.

Contents
========
1. Dependencies
2. Building

1. Dependencies
===============
pIRS requires the following libraries(with *-devel packages) to compile:

    zlib (http://www.zlib.net/)
    Boost Libraries (http://www.boost.org/)
    glibc-static
    libstdc++-static

pIRS requires the following tools to generate and analyse profiles:

    Perl 5 (http://www.perl.org/)
    Gzip (http://www.gnu.org/software/gzip/)
    Gnuplot 4.4 (http://www.gnuplot.info/)
    GNU Core Utilities (http://www.gnu.org/software/coreutils/)
    SAM Tools (http://samtools.sourceforge.net/)

2. Building
===========
The GNU Compiler Collection version 4.1.2 and above are needed. (http://gcc.gnu.org/)

    make

All tools will be linked to top path after make.
You are free to use the following command to install them to /TARGET/PATH/ :

    find . -type l|while read a;do cp --copy-contents -LR  "$a" /TARGET/PATH/;done