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macos.yml
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name: MacOS Build
on:
push:
branches: [ dev, itk_update ]
tags:
- v*
pull_request:
branches: [ dev ]
workflow_dispatch:
jobs:
build:
name: Build and upload artefact
strategy:
# max-parallel: 1
matrix:
os: [macos-latest, macos-13]
python-version: ["3.8", "3.9", "3.10", "3.11"]
# os: [macos-13]
# python-version: ["3.10"]
runs-on: ${{ matrix.os }}
steps:
- name: Checkout code
uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Set up python versions ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Detect if arm and set build variables
if: runner.arch == 'ARM64' || runner.arch == 'ARM64'
run: |
APPLE="ON"
echo "APPLE=${APPLE}" >> $GITHUB_ENV
APPLE_ARM64="ON"
echo "APPLE_ARM64=${APPLE_ARM64}" >> $GITHUB_ENV
MACOSX_DEPLOYMENT_TARGET="14.0"
echo "MACOSX_DEPLOYMENT_TARGET=${MACOSX_DEPLOYMENT_TARGET}" >> $GITHUB_ENV
_PYTHON_HOST_PLATFORM="macosx-14.0-arm64"
echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV
ARCHFLAGS="-arch arm64"
echo "ARCHFLAGS=${ARCHFLAGS=}" >> $GITHUB_ENV
PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')")
echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV
CMAKE_OSX_ARCHITECTURES="arm64"
echo "CMAKE_OSX_ARCHITECTURES=${CMAKE_OSX_ARCHITECTURES}" >> $GITHUB_ENV
- name: Detect if x64 and set build variables
if: runner.arch == 'x64'
run: |
APPLE="ON"
echo "APPLE=${APPLE}" >> $GITHUB_ENV
APPLE_ARM64="OFF"
echo "APPLE_ARM64=${APPLE_ARM64}" >> $GITHUB_ENV
MACOSX_DEPLOYMENT_TARGET="13.0"
echo "MACOSX_DEPLOYMENT_TARGET=${MACOSX_DEPLOYMENT_TARGET}" >> $GITHUB_ENV
_PYTHON_HOST_PLATFORM="macosx-13.0-x86_64"
echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV
ARCHFLAGS="-arch x86_64"
echo "ARCHFLAGS=${ARCHFLAGS=}" >> $GITHUB_ENV
PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')")
echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV
CMAKE_OSX_ARCHITECTURES="x86_64"
echo "CMAKE_OSX_ARCHITECTURES=${CMAKE_OSX_ARCHITECTURES}" >> $GITHUB_ENV
- name: Checkout submodules
run: |
git submodule init
git submodule update
- name: Build zlib
run: |
git clone https://github.com/madler/zlib.git
mkdir zlib-build-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM}
cd zlib-build-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM}
cmake ../zlib -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=../zlib-install-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM}
make install
cd ..
- name: Build ITK
run: |
mkdir ITK-build-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM}
cd ITK-build-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM}
cmake \
-DBUILD_SHARED_LIBS=OFF \
-DBUILD_TESTING=OFF \
-DBUILD_EXAMPLES=OFF \
-DCMAKE_BUILD_TYPE=Release \
-DCMAKE_INSTALL_PREFIX=../ITK-install-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} \
../ITK
make install
cd ..
- name: Build samseg for python version ${{ matrix.python-version }} and test
run: |
python -m pip wheel . -w ./dist-${PYTHON_VERSION_STR}-${_PYTHON_HOST_PLATFORM} --no-deps --verbose
env:
ITK_DIR: ITK-install-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }}
ZLIB_INCLUDE_DIR: zlib-install-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }}/include
ZLIB_LIBRARY: zlib-install-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }}/lib/libz.a
APPLE_ARM64: ${{ env.APPLE_ARM64 }}
APPLE: ${{ env.APPLE }}
MACOSX_DEPLOYMENT_TARGET: ${{ env.MACOSX_DEPLOYMENT_TARGET }}
_PYTHON_HOST_PLATFORM: ${{ env._PYTHON_HOST_PLATFORM }}
ARCHFLAGS: ${{ env.ARCHFLAGS }}
CMAKE_OSX_ARCHITECTURES: ${{ env.CMAKE_OSX_ARCHITECTURES }}
- name: Upload artifact
uses: actions/upload-artifact@v4
with:
name: macos-wheels-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }}
path: dist-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }}/*.whl
test:
name: Test the wheel
needs: build
strategy:
# max-parallel: 1
matrix:
os: [macos-latest, macos-13]
python-version: ["3.8", "3.9", "3.10", "3.11"]
# os: [macos-13]
# python-version: ["3.10"]
runs-on: ${{ matrix.os }}
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Python - set up ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Detect if arm and set wheel variables
if: runner.arch == 'ARM64' || runner.arch == 'ARM64'
run: |
_PYTHON_HOST_PLATFORM="macosx-14.0-arm64"
echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV
PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')")
echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV
SAMSEG_TEST_PATH=${GITHUB_WORKSPACE}/samseg
echo "SAMSEG_TEST_PATH=${SAMSEG_TEST_PATH}" >> $GITHUB_ENV
- name: Detect if x64 and set build variables
if: runner.arch == 'x64'
run: |
_PYTHON_HOST_PLATFORM="macosx-13.0-x86_64"
echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV
PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')")
echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV
SAMSEG_TEST_PATH=${GITHUB_WORKSPACE}/samseg
echo "SAMSEG_TEST_PATH=${SAMSEG_TEST_PATH}" >> $GITHUB_ENV
- name: Download artifact
uses: actions/download-artifact@v4
with:
name: macos-wheels-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }}
path: ${{ github.workspace }}
- name: Install the wheel and test dependencies
run: |
python -m pip install samseg*.whl
python -m pip install pytest
python -m pip install tensorflow
cd ..
python -c "import samseg"
python -m pytest --pyargs samseg.tests
publish:
name: Publish the wheel
needs: test
strategy:
max-parallel: 1
matrix:
os: [macos-latest, macos-13]
python-version: ["3.8", "3.9", "3.10", "3.11"]
runs-on: ${{ matrix.os }}
if: startsWith(github.ref, 'refs/tags')
steps:
- name: Python - set up ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Detect if arm and set wheel variables
if: runner.arch == 'ARM64' || runner.arch == 'ARM64'
run: |
_PYTHON_HOST_PLATFORM="macosx-14.0-arm64"
echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV
PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')")
echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV
- name: Detect if x64 and set build variables
if: runner.arch == 'x64'
run: |
_PYTHON_HOST_PLATFORM="macosx-13.0-x86_64"
echo "_PYTHON_HOST_PLATFORM=${_PYTHON_HOST_PLATFORM}" >> $GITHUB_ENV
PYTHON_VERSION_STR=$(python -c "import sys;print(f'cp{sys.version_info.major}{sys.version_info.minor}')")
echo "PYTHON_VERSION_STR=${PYTHON_VERSION_STR}" >> $GITHUB_ENV
- name: Download artifact
uses: actions/download-artifact@v4
with:
name: macos-wheels-${{ env.PYTHON_VERSION_STR }}-${{ env._PYTHON_HOST_PLATFORM }}
path: ${{ github.workspace }}
- name: Upload to PyPI
run: |
python -m pip install twine
python -m twine upload *.whl -u __token__ -p "$PASSWORD"
env:
PASSWORD: ${{ secrets.PYPI_TOKEN }}