From 98514aa47cfa7ca1f068d7ae3369a916e554f788 Mon Sep 17 00:00:00 2001 From: Tommaso Comparin <3862206+tcompa@users.noreply.github.com> Date: Thu, 2 Nov 2023 11:26:13 +0100 Subject: [PATCH] Rephrase sentence about Z size of FOV/well ROIs --- docs/tables.md | 12 ++++++++---- 1 file changed, 8 insertions(+), 4 deletions(-) diff --git a/docs/tables.md b/docs/tables.md index 6b9f8ab73..b2e4d6f35 100644 --- a/docs/tables.md +++ b/docs/tables.md @@ -258,10 +258,10 @@ tasks) always include two specific ROI tables: * The table named `well_ROI_table`, which covers the NGFF image corresponding to the whole well[^1]; * The table named `FOV_ROI_table`, which lists all original fields of view (FOVs). -Each one of these two tables includes ROIs that are only defined in the XY -plane, and span the whole image size along the Z axis. Note that this differs, -e.g., from ROIs which are the bounding boxes of three-dimensional segmented -objects, and which may cover only a part of the image Z size. +Each one of these two tables includes ROIs that span the whole image size along +the Z axis. Note that this differs, e.g., from ROIs which are the bounding +boxes of three-dimensional segmented objects, and which may cover only a part +of the image Z size. #### OME-Zarr import @@ -277,6 +277,10 @@ ROI tables to the NGFF images: case the image is a tiled well[^1]), or it may simply be useful for applying downstream processing to smaller arrays and avoid large memory requirements. +As for the case of `well_ROI_table` and `FOV_ROI_table` described +[above](#ome-zarr-creation), also these two tables include ROIs spanning the +whole image extension along the Z axis. + #### OME-Zarr processing ROI tables are also used and updated during image processing, e.g as in: