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phasor option in FLIMJ #29

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ChiaraStringari opened this issue Aug 4, 2023 · 1 comment
Open

phasor option in FLIMJ #29

ChiaraStringari opened this issue Aug 4, 2023 · 1 comment

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@ChiaraStringari
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ChiaraStringari commented Aug 4, 2023

We are trying to test the phasor option in FLIMJ software (after successfully installing FLIMJ with the indicated instructions. https://imagej.net/plugins/flimj/)
However the phasor option does not seam to be available ( see image in attachment)
What else should be done to install and use the phasor option?
Thank you in advance.
image

@JenuC
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JenuC commented Aug 8, 2023

The phasor-tools are not available on the FLIMJ-UI, because of the range and duty cycle issues on phasor calculation that requires more special UI elements.
However, you can use the imagej macros options available on the example codes to get phasors from FLIMJ (FlimLib). For getting phasors from a FLIM-stack, please use this ops-macro below.

import flimlib.flimj.FitParams
param = new FitParams()
phasorResult = op.run("flim.fitPhasor", param)

The phasorResult will have 6 outputs: offset, g,s,tphase,tmod,and avg-tau (in this order).
Hope this helps,

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